barSeed - Barley Seed Development Database

Probe CUST_24498_PI390587928

Source Contig U35_7222

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24498_PI390587928	Hv_44K_v2	TGTGACTTTGATCTGGCGAAGAAGCCTAAGGTATTGTGTGCCTAGTTATTATCTAAAAAA	956	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.980	4.664	1.514	0.724	0.285	0.435
Raw	693.281	863.751	240.825	176.481	26.793	43.079

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78915.2	1150	9e-22	998 - 1052	100	55 / 55	plus	ABC14199
JLOC1	JLOC1_52589.1	1325	5e-22	1120 - 1174	100	55 / 55	plus
Harvest21	ABC14199	1027	3e-25	957 - 1016	100	60 / 60	plus	ABC14199
Harvest35	U35_7222	1027	3e-25	957 - 1016	100	60 / 60	plus

Contig Sequence (1027 bp)

>U35_7222 1027 Hv_44K_v2
AGAGATAACACACGGCACGGGGGCTAGAAGAACGAACCGAACCCAAACACCTCCCACTCC
TCCTCCACGACGACCCCTTAACCCCATCCTCCCGCGCCCGAGCCCGCGAGGAGACAAGCC
AAAGCCATGGGCGACACCACCGCGCCCTCGCCGCCGAGGAGGTTCGGCAGGATCTGCGTC
TTCTGCGGCAGCAACTCCGGCAACCGCGCCGTGTTCGGCGACGCCGCGCTCGAGCTCGGC
CAGGGCCTGGTGACGAGGGGGGTCGATCTGGTCTACGGCGGCGGCAGCATCGGGCTGATG
GGCCTGATCGCGCAGACGGTTCTCGACGGCGGCTGCCGCGTCCTCGGGGTGATTCCAAGA
GCACTCATGCCCCTCGAGATATCCGGTGCAAGTGTTGGAGAAGTAAAGATTGTCTCCGAC
ATGCATGAGAGGAAAGCTGAGATGGCGCGACAAGCCGATGCATTCATTGCTCTTCCGGGT
GGGTATGGAACAATGGAAGAGCTGTTAGAGATGATCACTTGGTCGCAGCTTGGAATCCAT
GACAAACCGGTCGGGTTGCTAAACGTCGATGGGTACTATGATCCGTTACTCGCGCTGTTC
GACAAGGGCGCGGCGGAAGGGTTTATTAAGGCCGATTGCAGGCAGATAATCGTGTCGGCA
CCAACTGCCCACGAACTGCTGACAAAAATGGAGCAATACACCCGTTCACACCGGGAGGTG
GCCTCCCGGACGAGCTGGGAGATGACCGAGATGGGCTACGGGAAAGCACCGGAGCCGGAG
GAGGAGGCGGCGGCATCGTAGCAATGCCTCGCCGATGCGTGTCGTTGTCATCGTCATCGA
TATCCCTTGGTGCTCAACTGGCCGCTGGGATTGCAATTGCAATAATCTTACGTAGTGCTC
TCTTGTGATTTATTCGTTGTTGGTTGCCTTTCATGTAACCCCGTAGTACGTTGGATTGTG
ACTTTGATCTGGCGAAGAAGCCTAAGGTATTGTGTGCCTAGTTATTATCTAAAAAAAAAA
AAAAAAA

Homology of Contig U35_7222 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g51210.1	224	1e-133	protein\|uncharacterized protein PA4923, putative, expressed
Brachypodium v1_2	Bradi2g47860.1	225	7e-137
Arabidopsis v10	AT5G11950.1	216	9e-98	Putative lysine decarboxylase family protein \| chr5:3855072-3856815 FORWARD LENGTH=216