barSeed - Barley Seed Development Database

Probe CUST_24492_PI390587928

Source Contig U35_7228

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24492_PI390587928	Hv_44K_v2	CTCAAACAAATGATCTATAGTTCAGCCTCAATACATGTACGGTCTTTTACAGTGCATTTA	1026	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363877	6637	2e-24	6003 - 6062	100	60 / 60	plus	None
MLOC	MLOC_58909.2	3190	2e-24	2881 - 2940	100	60 / 60	plus	None
JLOC1	JLOC1_38299.2	3329	8e-25	2825 - 2884	100	60 / 60	plus
Harvest35	U35_7228	1133	3e-25	1027 - 1086	100	60 / 60	plus

Contig Sequence (1133 bp)

>U35_7228 1133 Hv_44K_v2
AATTTCAGAGTCTGAAGAACAGATTAAATATCGTTTGGAAAAGGAAGGAAAGTGGCTGGA
ATGGTGCTCTGAAGCTTTGGATGAAGAGCAGGACATATTGAAACGACTGGATAGGCTACA
GAATACAAGTGTAAATCTTCCGAAGGAAAAGGTTCTTTCAAGAATTCGCCGGTACCTCCA
GATAATCGGTGAAAAGATTGGAAAAGTCGTTGCCCAACATGTAGAATCGTACAAGCAGTC
CCGTATGACCACAAGATTATGGAATTATGTGGCAACCTTTTCAAATATGTCTGGGGAGCA
ATTGCGCGATCTCTATTTAAAACTTAGTCAGGACCAAATGGAAGCTGGAGCCGGCCCCTC
ACATGGGGGCAATTTTGCACCCGCTCCTCCTAACAGAGGTTCTTCAAATCAGCCTCATCC
TCCTAGAAACCAAAGGCCAACAAGGTCTTTCCAGCACACTCCAGAGCCTCTTAATAATGG
TGAAAACACTGGGAATTCGGAAGCCTGGAAGCGTCGGAGGAGAGCTGATCAGGATAATCA
GTTTGACAACCAACCTATGTATCCACCTCCTCCAATTATGGCAAATGGTAACAGGTCGCA
GGAATCTAGCAGTTCTGCTGGTATTCTTGGTTGGGGTCCAGTTGAAATGAGACGATATGG
CAATGACAGACCTAAGAGAGGTGTTCATCCCAGTCGTTTTCCTGCCGGGCATGGGCCTTT
GCTTTAGCTGAAGTAGTCAGCTTTGTCAATTCCTAGGAGTCTTCAGCTTCTATATGCAGG
TAGAAGTGGAGAATTGGAATTCTTTTTAGGCAAGACAAAATAATAAGCTGTCAATATCTT
GTCTGGATCACAGCTTGGAGTCTGTGCCTCTGAAGAAACAGCAGATGTGAACAGAAGATT
CCTGACACTGAAACAAATATATGGGTCTTGTAAACCGCCAAGAGGAAGAGTCTCAGAAAA
TTTTGTCGGTCCAGTTTTGTGGTCTAATAGAAGAAAATTTCCGTTGGGGTCTTTAAGAAG
GTTCATCTCAAACAAATGATCTATAGTTCAGCCTCAATACATGTACGGTCTTTTACAGTG
CATTTATATATAATGAAAATTTGGTTTAGTTGGACAAAAAAAAAAAAAAAAAA

Homology of Contig U35_7228 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g46590.1	1003	1e-132	protein\|SNF2 family N-terminal domain containing protein, expressed
Brachypodium v1_2	Bradi1g18910.1	1735	5e-140
Arabidopsis v10	None