- Probe CUST_24490_PI390587928
- Source Contig U35_7230
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_24490_PI390587928 | Hv_44K_v2 | AAGCCAGCCCTTTGTAAGTCTCTTCAAACTAGAAATAGAACTGTTAGCATGTGATCCAAA | 677 | GeneList: darkred MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.895 | 1.467 | 1.595 | 1.079 | 0.431 | 0.446 |
| Raw | 1464.957 | 3686.743 | 3487.613 | 3692.927 | 522.847 | 585.971 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_60274.2 | 3019 | 2e-23 | 98 - 155 | 100 | 58 / 58 | minus | ABC14442 |
| MLOC | MLOC_60274.1 | 4097 | 2e-23 | 124 - 181 | 100 | 58 / 58 | minus | ABC14442 |
| MLOC | MLOC_60274.6 | 2997 | 2e-23 | 90 - 147 | 100 | 58 / 58 | minus | ABC14442 |
| MLOC | MLOC_60274.3 | 4054 | 2e-23 | 98 - 155 | 100 | 58 / 58 | minus | ABC14442 |
| MLOC | MLOC_60274.5 | 4124 | 2e-23 | 96 - 153 | 100 | 58 / 58 | minus | ABC14442 |
| MLOC | MLOC_60274.4 | 3399 | 2e-23 | 96 - 153 | 100 | 58 / 58 | minus | ABC14442 |
| JLOC1 | JLOC1_39289.4 | 4131 | 1e-23 | 3975 - 4032 | 100 | 58 / 58 | plus | |
| JLOC1 | JLOC1_39289.3 | 4128 | 1e-23 | 3972 - 4029 | 100 | 58 / 58 | plus | |
| JLOC1 | JLOC1_39289.2 | 3794 | 1e-23 | 3638 - 3695 | 100 | 58 / 58 | plus | |
| JLOC1 | JLOC1_39289.1 | 4075 | 1e-23 | 3919 - 3976 | 100 | 58 / 58 | plus | |
| Harvest21 | ABC14442 | 751 | 3e-25 | 678 - 737 | 100 | 60 / 60 | plus | ABC14442 |
| Harvest35 | U35_7230 | 751 | 3e-25 | 678 - 737 | 100 | 60 / 60 | plus |
Contig Sequence (751 bp)
>U35_7230 751 Hv_44K_v2 CTTGTGGAGATGATTTGCGAGGATAGAGGCATCTTCTTGGGGATAGCTGATTTCATCAAA GGACTTGGGTTGACCATCCTGAGGGGTGTCATGGAAGCACGTAAAAGTAAAATCTGGGCA CGCTTTACTGTTGAGGCAAACAGGGACGTAACCAGAATGGAAATCTTTCTCTCGCTTGTA CGGTTGTTGGAACCCAATTGTGATGGCAGCGGAGCAGCAGAGAATCCCGGCAACAGTGTA AACATGCCTCTTGGTTTGGTTCACCAGCCTGTCATCCCGGCAACAGGTGGTATCCAGTGA GAAGTAGAGAGAACCCTCAGCCTCAGGCCAATCAACATTCAAGTGCTAAGAGCAGCAGTT CAGCGTGGGACCAGAGTTAAACACTTCAGATTCTGCATCTGCGCACTTTTGCCATGACTA GCATTGCCAGTTTGCCAATGCGCCACTTGCTTTCCAGTGTCGCCTTGCTGCGCAAATGTG CACCTTCGTCCCCCTCGAGTCGCAAAAAGTTCTTAACGCGAGATGCATCGAAGATGGGAA AATTGATTCTGCTAATGATCGATTAGGCAGTGCTATTGCTTGTACAATCTTAGTTTTGTT TGTTACTTTTGCCGTATATTAGTGGATTTTGTACCGAATGGAGGTCTTAGTTGATTTGTG TAGCGTTGGTAACTGGAAAGCCAGCCCTTTGTAAGTCTCTTCAAACTAGAAATAGAACTG TTAGCATGTGATCCAAAAAAAAAAAAAAAAA
Homology of Contig U35_7230 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |