barSeed - Barley Seed Development Database

Probe CUST_24484_PI390587928

Source Contig U35_7236

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24484_PI390587928	Hv_44K_v2	GTTTTGCTGGATGGTTGAACTGATATAGACGTAACTGTTGGCTAATATCAGGGATGTTAG	557	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361332	2003	2e-24	1884 - 1943	100	60 / 60	plus	ABC22036
MLOC	MLOC_69154.1	747	2e-24	585 - 644	100	60 / 60	plus	ABC22036
JLOC1	JLOC1_45813.1	742	8e-25	585 - 644	100	60 / 60	plus
Harvest35	U35_7236	638	3e-25	558 - 617	100	60 / 60	plus

Contig Sequence (638 bp)

>U35_7236 638 Hv_44K_v2
ACCCCCAAGCTGGATCATACCAACAAGGACCTCCCCAAGCTGGAGCATATCAACAAGGAC
CTCCCCAAGGGGCATACGCTTACCCAACAGCTTATGATTCTGCCACCGCTTACCAGCTGC
AGGCTAATGCGTATGCTAGCTATTCTGGCTATCCAGTTGCAGGTTATGCGCAACCCAACT
ATCCTGGCACGTACGCTGCACCTCAGCACCCAGTAGCCAGTGGCGCGGCTACTGATGCCA
CGAGCGCGTACGGTGCGGCTGGTAGCACGGGATATCCTGCTGCACCGGTTCAGGCAAGCA
GCGGGGCTGCCAATGCGGGGCAAGCACCGCCAGCTCCTTATCCTGCAACGTATGACCCAA
CCAAAGCAGCCCAGAGGTGAAAAATCCGGGGTCGTAACCTGAAGATGGCCTGTATGCCCG
CAAAATTTTATCCAAAAATTCTCATGGCTCTCATTTCCTTCATGTACATTCATTCACTCC
CTGTAGCTTTATGCACACCATGGGGCCGCTGAGAGTCGCAGTTTATGGTCGGAGTCTTGA
ATTGATTTGTATCTCTTGTTTTGCTGGATGGTTGAACTGATATAGACGTAACTGTTGGCT
AATATCAGGGATGTTAGAATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_7236 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None