barSeed - Barley Seed Development Database

Probe CUST_24483_PI390587928

Source Contig U35_7237

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24483_PI390587928	Hv_44K_v2	CGGGTTAATTATGGAGATGTATTTCATCCGATAATAAAGTGAGCTATGTAATGCTGGTAA	901	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58020.1	1180	6e-24	72 - 130	100	59 / 59	minus	ABC02614 ABC02617 ABC45024
JLOC1	JLOC1_37666.2	936	3e-24	872 - 930	100	59 / 59	plus
JLOC1	JLOC1_37666.1	1018	3e-24	954 - 1012	100	59 / 59	plus
Harvest21	ABC45024	382	1e-23	16 - 75	98	59 / 60	minus	ABC45024
Harvest35	U35_7237	976	3e-25	902 - 961	100	60 / 60	plus

Contig Sequence (976 bp)

>U35_7237 976 Hv_44K_v2
GCGGAGCTCCCGACGGCGACCTTCGCCGTTCCATTCTCTGCCCATTGATCAACCGGTGCA
GTGAAACCCATGGCTGCCCGCCTGCACCGTTTCCTCCTCCTCACCGTGCTCCTCCTGCTG
ATAGGCGGCGCCTCCTCAGCAGGCGACGTCGTCGCGGCGGGAAACGGTAAGGTGCGTATG
GAGCTCTACTACGAGTCGCTGTGCCCCGACTCAGTGCAGTTCATGGTGGACAGCCTCGCC
AGAGTCTTGAAAGACGGACTCCTCGACGCCGTGGACCTAACCCTCGTTCCCTACGGCAAC
GCCAAGGTTGGCGCGCATGGCGCCATCAGATGTCAGCATGGTCCGGATGAATGCCTCCTG
AACACCGTGGAGGCTTGCGCCATCGACGCCTGGCCGAACGTGACTGTGCATTTCGGTTTC
ATCAACTGCGTGGAGGAGCTGGCGATGGAGTACAAGCACCGGGACTGGCAGTCGTGCTTC
CAGAAACAAGGGCTTCACCCCAAGCCTGTCATGGAGTGCTACAAGAGTGAGCATGGCCAC
AAGCTTTCACTCAAGTACGGGAGACAGACAGATGCGCTCGTGCCTCGACACACTTCCGTT
CCATGGGTGGTAGTTGATGGCAAGCCACTGTATGATGACTTCGGGGACTTCGTAGCTTAC
ATCTGCAAGGCGTACAAGGGACATCCTCCCAAGATTTGCTGAAACTCGGGCCGCCATTAT
GCAACCGTACAACAGGTGGCTGTGTCACGCAATGGCATCAGTAACAACTCCGTCGATTTC
GAGCTCGATGAAGGCGTCGACGGCACGATTAAAATGCTGCGGGTTGATAACAATTGATAA
ATTATGTTTCCTTTCAGGTCCCATTCATAGCGTGAACATATTACAGTTTCATCCTTCTGC
CCGGGTTAATTATGGAGATGTATTTCATCCGATAATAAAGTGAGCTATGTAATGCTGGTA
AAAAAAAAAAAAAAAA

Homology of Contig U35_7237 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g18454.2	257	3e-91	protein\|gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed
Brachypodium v1_2	Bradi1g65250.3	244	3e-87
Arabidopsis v10	AT1G07080.1	265	1e-62	Thioredoxin superfamily protein \| chr1:2170069-2171861 FORWARD LENGTH=265