barSeed - Barley Seed Development Database

Probe CUST_2447_PI390587928

Source Contig U35_2020

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2447_PI390587928	Hv_44K_v2	CTGTTTGACATACATGTGAAGGCGACGGGTGACACTCACATTGATGATCATCACTCGAAT	509	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248911.1	1460	2e-24	603 - 662	100	60 / 60	plus	ABC05639 ABC05640
MLOC	MLOC_38596.2	1301	2e-24	1224 - 1283	100	60 / 60	minus	ABC05639 ABC05640
MLOC	MLOC_38596.1	716	2e-24	643 - 702	100	60 / 60	minus	ABC05639 ABC05640
JLOC1	JLOC1_25112.2	1423	8e-25	228 - 287	100	60 / 60	plus
JLOC1	JLOC1_25112.1	1812	8e-25	15 - 74	100	60 / 60	plus
Harvest21	ABC05639	1325	3e-25	478 - 537	100	60 / 60	plus	ABC05639
Harvest21	ABC05641	568	1e-24	510 - 568	100	59 / 59	plus
Harvest35	U35_2020	569	3e-25	510 - 569	100	60 / 60	plus
Harvest35	U35_2018	1586	3e-25	478 - 537	100	60 / 60	plus

Contig Sequence (569 bp)

>U35_2020 569 Hv_44K_v2
CCCAGCTCTGGATTCCGTCCCGTCGCCGCGCCGTTGGCGAGCGTATTCGATCCGGCCTCG
AGCTCAGGCTCAGTGCAGCTTCGCCCGAACTGCCCAGCAACTAGCACCAACCCGAGCCTA
GGCCTGCTGGATTTCGCGCCCACCGCGGGCTCTCGCTGATGACCACCGCGCCGCCCGTCT
CCCCCTCCCTCTCCCTTTCCCGACCGCACCCCGAGCGGGCCGCTCCGTTCCCCAGATCCT
CGGTGAGGACCGGAGCCGGGGTCGCCTTCCCCGCTCGGCCGTACGGGTCGTTGCTTCGCC
TGAGGTCGCGTGTCATGTCTGCCAGCGGCGTCGGCTCTCCGGTGGCGCCTGAAGACCCCG
CAGCCTCATGTAGGTTGGGAGAGGTCAAGAGGGTAACGAAGGAGACAAATGTGCATGTCA
AGGTCAACCTTGACGGCACCGGCGTTGCCGACTGCAGCACAGGGATACCGTTCTTGGATC
ACATGCTTGATCAACTGGCTTCTCATGGACTGTTTGACATACATGTGAAGGCGACGGGTG
ACACTCACATTGATGATCATCACTCGAAT

Homology of Contig U35_2020 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g52710.3	213	1e-51	protein\|imidazoleglycerol-phosphate dehydratase, putative, expressed
Brachypodium v1_2	Bradi5g21900.1	271	4e-55
Arabidopsis v10	None