barSeed - Barley Seed Development Database

Probe CUST_2446_PI390587928

Source Contig U35_2021

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2446_PI390587928	Hv_44K_v2	TGCCTGTGATAATGGTTTGGCCACTCAAGAGAATAAAGCAAAACTCATAGTACTAAAAAA	1375	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357373	1438	9e-22	1300 - 1354	100	55 / 55	plus	ABC05639 ABC05640
JLOC1	JLOC1_49065.1	987	5e-22	811 - 865	100	55 / 55	plus
Harvest21	ABC05640	1443	3e-25	1373 - 1432	100	60 / 60	plus	ABC05640
Harvest35	U35_2021	1498	3e-25	1376 - 1435	100	60 / 60	plus

Contig Sequence (1498 bp)

>U35_2021 1498 Hv_44K_v2
CCGGCCCAACTTTTGCCTGTCGCTGACGAGCCCCTACCCCTCCTCCCTCCCGTCCTCACT
CCGCCGCCGCTGACCTCGAGTTTCTCCGGGCCCTACGCCGACCCCCAGCCCCACCTCCAG
CTCCGGGGTCCGCCCCGCCGCCGCGCTGTCCGAGCTCGAGTTCCAGTGCAGCCTTGCCCG
AATTTCCCGGTCCAGGCCTGCTCGACTTCGCGCCCACCGCGAGCTCTCGCTGATGACCAC
CGCGCCGTCCCTCTCTCCCTCGCTCTCCCGACTACACTCCGCACGGGCCTCTCCGTTCCC
CAAATCCCCGCTGAGGTCCGGGGCCGGGGTCGCCTTCCCCGCTCGGCCGTACGGACCATC
GCTTCGCCTGAGGTCGCCTGCCATGGCCGCCAGCGGCGTCGGCGGGAACGGCTCTCCGAT
GGCGCCCGAGGACTCCACAGTGTCATCTAGGTTGGGAGAGGTCAAGCGGGTAACCAAGGA
GACAAATGTGCATGTCAAGATCAACCTGGACGGCACTGGTGTTGCCAACTCCAGCACAGG
GATACCCTTCTTGGATCACATGCTTGATCAACTGGCATCTCATGGACTGTTTGATGTATA
CGTGAAGGCGACGGGTGACACACACATTGATGATCATCACTCGAATGAGGATATTGCTTT
AGCAATTGGAACGGCATTACTTCAAGCACTTGGTGACCGAAAAGGAATCAACCGGTTTGG
ACATTTTACAGCACCACTTGATGAGGCAGCAGTTGAGGTTATACTGGATCTATCTGGTCG
ACCTCATTTGAGCTGTGGCTTGAGTATTCCTACTGAGAGAGTTGGGACATATGATACACA
GCTAGTTGAGCACTTTTTCCAGTCCCTTGTGAATACATCTGGGATGACGCTTCACATCCG
TCAGCTTGCGGGGAACAACTCGCACCATATTATTGAGGCAACTTTCAAAGCATTTGCCAG
GGCGCTTCGACAAGCAACGGAATATGACTTACGCCGACGTGGCACTATACCCAGCTCGAA
AGGTGTTCTGTCAAGGTCGTAGTGTCGCAAGACCAAAAACTGGATGCACGCCATTCGCCC
TCGAAGTGGACAGATGGACGGTCGCCTACTACATCTCTGTTGCTACTTGCGCTTGGAGTC
CGCTGGGCTTGCAACAAGAAGAGCGTCGAAATGACCTGCCATCTTGTCGTCAGGGTTTGT
TTATGTTGCTACCATTGGCACAATGTATCTGCTGACCGCTGCAATTTCGGCTGTTCCCTG
GACCAACCGCTGCTTCGGATTGCACGCCTGAAGATAAAAGGCTGCAAACGACTTGACATT
CTGAAATTATTTATACCTCTGAAATATGGATTTGGCATCGGTTCACGTGGCGTTGTGCCT
GTGATAATGGTTTGGCCACTCAAGAGAATAAAGCAAAACTCATAGTACTAAAAAAAAAAA
AAAAAACTGCCAAAACATCTTATATTGGAAAGAGGGTATAGAATAATAATGTGTGCCA

Homology of Contig U35_2021 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g52710.1	270	1e-150	protein\|imidazoleglycerol-phosphate dehydratase, putative, expressed
Brachypodium v1_2	Bradi5g21900.1	271	8e-156
Arabidopsis v10	AT3G22425.2	270	3e-115	\| Symbols: IGPD \| imidazoleglycerol-phosphate dehydratase \| chr3:7951110-7952853 FORWARD LENGTH=270