barSeed - Barley Seed Development Database

Probe CUST_24467_PI390587928

Source Contig U35_6161

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24467_PI390587928	Hv_44K_v2	ATGGCATACGTGGAACCCAGAAAATGCTACTGTTTGGCACTTTGTATTGTACTTTGTCCG	1442	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.644	1.684	1.226	0.771	0.356	0.346
Raw	1321.137	2148.029	1339.507	1322.093	215.954	228.638

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370871	1535	3e-22	1471 - 1529	98	59 / 60	plus	ABC14958
JLOC1	JLOC1_42940.1	1632	6e-21	1541 - 1598	97	58 / 60	plus
Harvest21	ABC14958	1505	3e-25	1443 - 1502	100	60 / 60	plus	ABC14958
Harvest35	U35_6161	1505	3e-25	1443 - 1502	100	60 / 60	plus

Contig Sequence (1505 bp)

>U35_6161 1505 Hv_44K_v2
CGCCGCCGGTGCGTCGCCGCCACCCTCACCGCCCGCGACGAGACATGCCCGCCGGCCGGA
AGCGCCCAGCCCCAGCCCCCTTCGCCGGCTTCTCAACCTTCGCCCGATCCCTCCTCTTCT
CCCCCGCCTCCGGCTTCTCCAGGCTGCCTCTCACCAACGCCCCCGCCGCCAAACCCCATC
AAGAGACGGCCGGCATGCGGCCACCGGCGTCCAAGCGCGCGAAGCAGGCCGATCCCTCCA
GCGACGACGAGGAGGAGCGCCCCAGCAGCGACGCCGAGGCGGACAGCGACGGCGACGGCG
ACGGCGACAGCGACAGCTCTCTTGAGTGCTCGAGCAGCGACGACGACGACGACGCGTCGC
AGGAGATGGAGACGGTGCAGGCGGACTTCGCCTTCTTCGACCCCAAGCCCACCGACTTCC
ACGGCGTCAGGCTGCTGCTCAAGACCTACCTCGACTCCAAGCCCTGGGACCTCACCGGCT
TCGTCGACCTCGTCCTGGAGCAGACCACCGTCGGCACCGTCGTCAAGATGGCCGAGGATG
AGGATGGGGAAGCAAATGGGGGTGACAAGAGCGACGAGGGCGACGACGATGATGAGGACC
TGTTCGGCCTCATTACCGTGCTCAATTTGGGAAGATATGGGGAGAGCCGTTGCATCAAGG
ATCTGAAGGAATATCTGCTTGCTGTTTGCGGCGACAAGGACACCAAGAAGAAGCTCAAGT
CGCTGCTGGAAGAGAAGGCATCTACCGTCGGCCTGCTGGTGTGCCGGCGCTTTGTGAATT
TCCCCTATGAAATGGTGCCTAAGATGTATGATTCACTCTTTGACGAGGTTTCCTGGGCGA
CAGAAGATGAGCCAACACAAGAACTCCAGGACTCCTTCCGGTTCAAGCAGTACCTGTTCC
TTGTCAGAATCTTGGAGAGAAAAACTCCACCAAAGCAGAAATCAAAGAACAATAAAGATG
AGGATGAACCTGTTATCTATCCGAAGTTGGAGGACGAAATATTACGTGAGCTTAGCACGT
GGTCATTTACTTTCCCAATTCGCGCCGAACAGTCGGCACAGCAAGAGCTGAAGAACTACA
AGGAGATGGGCCTGGTGATGTGCGTCAAAGCCGACGTGATCCCGAAGTTCCGCAAGAAGC
TGGAGGCTTTGGTGTCGGAATAGGCAGGTCTATTTTTGCTCGTAGGAGAAGAAATCCCAA
GTGGGATTCTGCTGCTGTCCATCCGCAAGACGCAATGTCATTGTGCAACTGTCACCACAG
TTGCGAAAAGAGGCTGGTTCTGTAGGGAGGGGTCGTTTATGAAGTACTCCATACTTTTCT
TGTATTCAGTTTTTGCCACAGGATAGATTATATTCATGGAGGGTTTCTTTGGTTGCGTGA
AAACATGCATGTGTGACATTTCTGATTCAACTGAAATCTGTGCTCCATGAAAATGCTCTG
GAATGGCATACGTGGAACCCAGAAAATGCTACTGTTTGGCACTTTGTATTGTACTTTGTC
CGTTC

Homology of Contig U35_6161 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g63690.1	359	4e-143	protein\|BCCIP, putative, expressed
Brachypodium v1_2	Bradi1g01070.1	370	4e-170
Arabidopsis v10	AT2G44510.1	326	2e-82	CDK inhibitor P21 binding protein \| chr2:18377411-18379030 FORWARD LENGTH=326