barSeed - Barley Seed Development Database

Probe CUST_24466_PI390587928

Source Contig U35_6162

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24466_PI390587928	Hv_44K_v2	CCAGCCCACCGACTTCCACGGCGTCAGGCTGCTGCTCAAGACCTACCTCGACTCCAAGCC	429	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370871	1535	2e-23	434 - 491	100	58 / 58	plus	ABC14958
MLOC	MLOC_65268.2	1547	2e-23	1045 - 1102	100	58 / 58	minus	ABC14958
MLOC	MLOC_65268.3	971	2e-23	475 - 532	100	58 / 58	minus	ABC14958
MLOC	MLOC_65268.1	1739	2e-23	1042 - 1099	100	58 / 58	minus	ABC14958
JLOC1	JLOC1_42940.1	1632	1e-23	504 - 561	100	58 / 58	plus
Harvest21	ABC14958	1505	4e-24	406 - 463	100	58 / 58	plus	ABC14958
Harvest35	U35_6162	489	3e-25	430 - 489	100	60 / 60	plus
Harvest35	U35_6161	1505	4e-24	406 - 463	100	58 / 58	plus

Contig Sequence (489 bp)

>U35_6162 489 Hv_44K_v2
GCGATTATTTCTCCCCCTTTCCCCTTAGCGCCGCCGGTCGCCGCCGCCACCCTCACCGCC
CGCGACGAGACATGCCCGCCGGCCGGAAGCGCCCAGCCCCAGCCCCCTTCGCCGGCTTCT
CAACCTTCGCCCGATCCCTCCTCTTCTCCCCCGTCTCCGGCTTCTCCAGGCTGCCTCTCA
CCTACGCCCCCGCCGCCAAACCCCATCAAGAGACCGTCGGCATGCCGCCGCCGCCTTCCA
AGCGCGCGAAGCAGGCCGAGCCCTCCAGCGACGAGGAGGAGGAGCGCCCCAGCAGCGACG
GCAACGGCGACAGCGACGGCGACGGCGACGGCGACAGCGACAGCTCTCTTGAGTGCTCGA
GCAGCGACGACGACGACGACGCGTCGCAGGAGATGGAGACGGTGCAGGCGGACTTCGCCT
TCTTCGACCCCAGCCCACCGACTTCCACGGCGTCAGGCTGCTGCTCAAGACCTACCTCGA
CTCCAAGCC

Homology of Contig U35_6162 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None