barSeed - Barley Seed Development Database

Probe CUST_24464_PI390587928

Source Contig U35_6164

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24464_PI390587928	Hv_44K_v2	GACTGTTCTTTGCTATGGGTTAAGGACAGGAGTTATCTTGTAGAAGCATTGTCTACATAT	949	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361266	1845	2e-24	1058 - 1117	100	60 / 60	plus	None
MLOC	AK360932	2011	2e-24	1261 - 1320	100	60 / 60	plus	None
MLOC	MLOC_77509.3	1021	2e-24	940 - 999	100	60 / 60	plus	None
MLOC	MLOC_77509.7	1053	2e-24	969 - 1028	100	60 / 60	plus	None
MLOC	MLOC_77509.1	1096	2e-24	1015 - 1074	100	60 / 60	plus	None
MLOC	MLOC_77509.10	896	2e-24	813 - 872	100	60 / 60	plus	None
MLOC	MLOC_77509.11	296	2e-24	231 - 290	100	60 / 60	plus	None
MLOC	MLOC_77509.4	1136	2e-24	1052 - 1111	100	60 / 60	plus	None
MLOC	MLOC_77509.2	1100	2e-24	1019 - 1078	100	60 / 60	plus	None
MLOC	MLOC_77509.5	1221	2e-24	1140 - 1199	100	60 / 60	plus	None
JLOC1	JLOC1_51692.7	957	8e-25	873 - 932	100	60 / 60	plus
JLOC1	JLOC1_51692.6	938	8e-25	854 - 913	100	60 / 60	plus
JLOC1	JLOC1_51692.5	999	8e-25	915 - 974	100	60 / 60	plus
JLOC1	JLOC1_51692.3	1361	8e-25	1277 - 1336	100	60 / 60	plus
JLOC1	JLOC1_51692.2	1418	8e-25	1334 - 1393	100	60 / 60	plus
Harvest21	ABC14959	1010	3e-25	831 - 890	100	60 / 60	plus
Harvest35	U35_6164	1129	3e-25	950 - 1009	100	60 / 60	plus

Contig Sequence (1129 bp)

>U35_6164 1129 Hv_44K_v2
CAGCTATGGCGGGGACGACGGCGGGTCGCTCCGGCCGATGGACGCGGAGCAGCTACGGGA
GTGCGGGCACCGGATGGTGGATTTCATCGCCGATTACTACAAATCCATCGAGAGATTTCC
CGTCCTCAGCCAAGTCCAGCCAGGATATCTAAAGGAACTTCTTCCAGATTCAGCTCCTAA
CCGACCTGATACTTTGGATACCCTTTTTGATGATATTCGTGAGAAGATCATACCTGGAGT
CACTCATTGGCAAAGTCCAAGTTATTTTGCATACTATCCCTCAAATAGCAGCACTGCTGG
ATTCCTGGGGGAGATGCTTAGTGCTGCCTTTAACATCGTTGGCTTCAGTTGGATAACCTC
TCCTGCTGCAACTGAGCTAGAGGTTATAGTCTTAGACTGGTTTGCAAAAATGCTTAAGCT
TCCAAGCCAATTTCTGTCAGATGCACCTGGTGGAGGAGTAATCCAGGGTACTGCCAGTGA
AGCAGTTCTTGTTGTACTATTGGCTGCACGAGATAGAACTTTAAAGAAGCATGGAAAAAA
ATCCCTTGAAAAATTAGTAGTTTATGCATCTGATCAGACACATTCTGCTCTGCAAAAGGC
ATGCCAGATTGCAGGAATTTTCCCAGAGAACTTCAGAGTTGTCAAAGCTGACTGTAGTAA
GAACTATGCTGTTGCACCTGAAGCAGTGACAGAGGCCATTTCCGTTGACTTGTCATCTGG
TTTGATACCATTCTTCATCTGTGCAACAGTAGGCACAACATCTTCATCTGCCGTGGACCC
CTTGCCTGAACTAGGAAACATAGCACAGGGCCATGACATGTGGTTCCATATTGATGCTGC
ATATGCTGGAAGTGCTTGTATATGCCCAGAGTATCGACATCACCTTGATGGAGTGGAAAA
AGCTGATTCATTCAATATGAATGCACACAAATGGTTCCTCACAAACTTTGACTGTTCTTT
GCTATGGGTTAAGGACAGGAGTTATCTTGTAGAAGCATTGTCTACATATCCAGAGTTTCT
TAAGAATAAGCCAGGATATCTAAAGGAACTTCTTCCAGATTCAGCTCCTAACCGACCTGA
TACTTTGGATACCCTTTTTGATGATATTCGTGAGAAGATCATACCTGGA

Homology of Contig U35_6164 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g25590.1	470	2e-170	protein\|decarboxylase, putative, expressed
Brachypodium v1_2	Bradi1g28960.1	486	0.0
Arabidopsis v10	AT2G20340.1	490	2e-179	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein \| chr2:8779804-8782490 FORWARD LENGTH=490