barSeed - Barley Seed Development Database

Probe CUST_24461_PI390587928

Source Contig U35_6167

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24461_PI390587928	Hv_44K_v2	AAGTTGCTGGGGCAACAATTGTTTTGATGACTCCAAAGTAATTACTGCATCCGTGTCAAA	706	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4537.1	3839	3e-22	19 - 74	100	56 / 56	minus	ABC24293
MLOC	MLOC_4537.2	3848	3e-22	14 - 69	100	56 / 56	minus	ABC24293
MLOC	MLOC_4537.3	3864	3e-22	14 - 69	100	56 / 56	minus	ABC24293
MLOC	MLOC_4537.4	4002	3e-22	14 - 69	100	56 / 56	minus	ABC24293
JLOC1	JLOC1_2837.2	3896	1e-22	3813 - 3868	100	56 / 56	plus
JLOC1	JLOC1_2837.1	3869	1e-22	3786 - 3841	100	56 / 56	plus
Harvest35	U35_6167	780	3e-25	707 - 766	100	60 / 60	plus

Contig Sequence (780 bp)

>U35_6167 780 Hv_44K_v2
AATTGTCAAGCATAAGTTTACATTAGAGATTGAAGAGCATTATGATTAAAAAACACAAGA
GAGGAATTACCATATGTATCCCTCATAAGATTTTATCATTACAATGGCTGCAAAATATAA
GTACACTGTGTATTACCTTTTAAACAAGGCCCACACAAGCTTAAGCATCCAGTCAAAATT
TATCCTCAAAGTATGATCTCAGGGATTGAATCAGATCTTCCCGAAGTAACTCTGGAATTT
TGGACCTAAATACTCTTCCAGAATCACTTATTAGCTGCTTCCTGATTGCCTCACTATCTT
GAGATATGCCTGTGTTCTGTATACACCGCCAGCGGCCGCTGGCAAGGCCAACCGTGGCGG
CTACAAGCAAGGCTCAGACTGAGAGAAGTCAGCTCGAGGAACAGATAAAGGCTGAGAAAC
TGAAGGCCCTGACCTTGAAGCGGGAAGGGAAGCAGGCAGAGGCTCTGGAGGCCCTTCGCT
CAGCAAAGCGCCTGGAGAAGAAGTTGGCCTCACTCAGCTAAGTACCCCATCACCTTCCTT
ACCTCACATTTTTATTTGGTAAGTCAATCCAGATGATAGTTTGTCTAATAAGGATGTAAT
ACTGTAATGCATGTCTGAATTAGTAGCAGAAGGCTAAAGGCTTATAACTTGTGAGCCAGG
TGCACAGCACCTTTGGTCATGTGTGTATGTAAAAATGTAGCAACTGAAGTTGCTGGGGCA
ACAATTGTTTTGATGACTCCAAAGTAATTACTGCATCCGTGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_6167 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None