barSeed - Barley Seed Development Database

Probe CUST_24457_PI390587928

Source Contig U35_6171

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24457_PI390587928	Hv_44K_v2	ATCATCGAGCATAAATGGCAATGGATTTGATCGGATCTGATATGAGGTTTCAAGAAAAAA	834	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.694	3.553	2.206	0.542	0.104	0.104
Raw	16536.413	32712.563	17780.067	6789.403	448.325	504.044

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_6171	905	3e-25	835 - 894	100	60 / 60	plus

Contig Sequence (905 bp)

>U35_6171 905 Hv_44K_v2
GCACCATCACCACACCACCTGCCTCCTCCCTCCAGCTCGCCACCTCACACCGCCGTCGAT
CCACCCATCCCGGCCTCCTCCGATGGCGTCCAGGCCGCTCCTCCTCCCCTGCTCCCTCGT
CGCCGTCCTCGTCCTCGCCCTCGCGGCCGGCTCCGAGGCGAGGGACCACGTCGTTGGCGG
CGGGGCCAACGGCGCGTGGAAGGTGCCGCCCCCGGCGCAGCACGAGGCGCTCAACGAGTG
GGCGCAGAAAACCCGCTTCCACGTCGGCGACAACCTCGTGTTCAAGTTCGACGCGGCGGC
GGACTCGGTGCTGGAGGTGACCCGGGCCGACTACGACCGGTGCAACACGGCCAGCCCCAT
CGTCACCTACAAGGCCAGCGCCGCCACCGTGCCGCTGCCGCCCAAGGGCGAGCGCTTCCG
CCACTTCATCAGCGGCGCGCCCGGCAATTGCCAGAAGGGCGAGCGCGTCATCGTCCTCGT
CATGTCCGAGAACCACGGACGCCGGGTCGTGCCGCCTGCCGCGCCGGCACCCGCTCACTC
CCCATCGTCCTCCTCCGAGGGGCTCGTGGAGGCGCCCGCCCACGCGCCCGCGCCGGCTCC
GACCACCGGCGCCGCGTGGAGGACGGCGTCCAGCGGCGGCTCCGTCGTCCTCGGCGCTCT
CCTCGGAGCTCTGCTCGTCGTTGGGTTCTGAGCAGGTTCCTGTCGTTGTTTTAGGAGCTT
AGGGTGGATTCTTTGATTAGGCTCTAGTTCATTTGGACGTTATTAAGATTAGAGGACAGA
CAGATGTGCTTCTTCTGTCTGTAGAAGAAGAAGATATTTTCTTTCCGGCGAAAAATCATC
GAGCATAAATGGCAATGGATTTGATCGGATCTGATATGAGGTTTCAAGAAAAAAAAAAAA
AAAAA

Homology of Contig U35_6171 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None