barSeed - Barley Seed Development Database

Probe CUST_2444_PI390587928

Source Contig U35_2023

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2444_PI390587928	Hv_44K_v2	CTAGGGTTAGTTTGTTTTGTTACCTTGAATTCAACCGGATCAAGTGACTCGGTTAAAAAA	1362	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.708	1.484	1.448	0.876	0.263	0.333
Raw	89.956	121.417	102.728	94.555	10.165	14.369

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_38764.3	1315	4e-23	1206 - 1262	100	57 / 57	plus
JLOC1	JLOC1_38764.2	1308	4e-23	1199 - 1255	100	57 / 57	plus
JLOC1	JLOC1_38764.1	1054	4e-23	945 - 1001	100	57 / 57	plus
Harvest21	ABC06314	711	3e-25	641 - 700	100	60 / 60	plus	ABC06314
Harvest35	U35_2023	1433	3e-25	1363 - 1422	100	60 / 60	plus

Contig Sequence (1433 bp)

>U35_2023 1433 Hv_44K_v2
AGCACAGCTTGCCAAGTCGTCTCCGCTATAACTAGAGCGGAACTCCCTCCCTCCGCCTCC
CCCATCCCATCCCCGAGCGAGCTCCCCAGCAGCAGCAGCGGCGGCCGGCCTCCCTCCCTC
CCTCCCTCCTCCTCCGGCGCCCCAGCAGCTCGCGCCGGCCCGAACCCCGCCGCCCCTCCT
CCTCCTCCTCCGGCGCCGTCGGCGGCAGGCATTGCGTCGCGCAGTAACAGTAATCAAAGT
CCAAGACAATGGTTGCACAAGCCTTTACCGTCGATTTGGACAAGCCTCTTGTATTTCAGG
TTGGTCATCTGGAGGAACAGTATCAGGACTGGGTTCACCAGCCAATTGTTAGCAAGGAGG
GGCCGCGCTTTTTTGCCAATGATGTATTGGAGTTCTTAACACGTACGAAATGGTGGGCAG
TTCCTCTCATTTGGTTGCCTGTTGTTTGCTGGTGCCTGAATACATCGATCCAAATGGGCC
ACACAGTTCCAGAAGTAGCTTTGATGGTTGTGGCAGGAATATTTATCTGGACACTGGTTG
AATACGTGCTGCATCGGTACCTGTTCCACATAGATACTAAAAGTTACTGGACAAACACGG
CTCATTATCTTCTGCATGGATGCCATCACAAGCACCCAATGGATGGGCTTCGACTTGTAT
TTCCACCAACTGCCGCAGCCATCTTGTGCTATCCGTTCTGGAATTTTGTCAAGCTCTTCA
CTACTACAACTACCACTCCTGGCGTGTTTGGAGGTGGCCTGTTGGGCTACGTGATCTATG
ATTGCACACACTACTACCTGCATCACGCCCACCCCTCGTTCGATCCAGCAAAATATCTCA
AGAAATACCATCTTAACCATCACTTCAGAATTCAAAACAAGGGCTTTGGAATAACATCGA
CCCTGTGGGACCACATATTTGGAACGCTGCCTTCAACGAAAACCGTCGACAAGAGCTCTT
GAGTTGTACCGCCTTGCAATGCCAGATATCAAGACTGTCCAATGGTTGATGACGGGTTGA
ACGGACGAACAAACAATTAATCGGAGATGTCACTGAAGTGCTTGTCACATCCTTGACGAT
GTGTCGCGAATAGAGTGGTTCCAGACTTGAGCATATGTTGTCATGTGTACAGAGAGGTTT
TTCTATCTGCTAGTATAGCACCAGCGTCGTTCATTTGTGGCTGTTGGTGTCCAGTATAAT
TTTTGGAACCAAGTAATTGCATGCATTGCTTGATATAATTTGTAAGTTTTACCAGCTTTG
CTAGTGTTTCAGCGAACCAAAAAAAAAAAAAATGTTGCCGGCCTTTCCTGCTTCTTTTGA
CAAGCACCAGCTGCAACTGGGGTGCATATGAAGAGAGACGCGCTAGGGTTAGTTTGTTTT
GTTACCTTGAATTCAACCGGATCAAGTGACTCGGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_2023 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g43363.1	239	9e-139	protein\|fatty acid hydroxylase, putative, expressed
Brachypodium v1_2	Bradi4g01070.1	238	7e-156
Arabidopsis v10	AT2G34770.1	237	2e-116	\| Symbols: FAH1, ATFAH1 \| fatty acid hydroxylase 1 \| chr2:14666776-14668061 FORWARD LENGTH=237