barSeed - Barley Seed Development Database

Probe CUST_24449_PI390587928

Source Contig U35_6180

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24449_PI390587928	Hv_44K_v2	GTATGTACAAGTGAAATGCATGTGACTCTAATATCCCAGCAAACTGATTTTGAGTATTTC	1163	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.917	5.497	0.985	0.781	0.905	0.862
Raw	59.827	69.740	10.540	11.882	3.450	4.491

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369925	1557	2e-24	1496 - 1555	100	60 / 60	plus	ABC12966
MLOC	MLOC_43780.3	1491	2e-24	1341 - 1400	100	60 / 60	plus	ABC12966
MLOC	MLOC_43780.4	1870	2e-24	1720 - 1779	100	60 / 60	plus	ABC12966
MLOC	MLOC_43780.6	1585	2e-24	1277 - 1336	100	60 / 60	plus	ABC12966
MLOC	MLOC_43780.5	1352	2e-24	1202 - 1261	100	60 / 60	plus	ABC12966
JLOC1	JLOC1_28315.5	1397	8e-25	1203 - 1262	100	60 / 60	plus
JLOC1	JLOC1_28315.4	1914	8e-25	1720 - 1779	100	60 / 60	plus
JLOC1	JLOC1_28315.3	1397	8e-25	1203 - 1262	100	60 / 60	plus
JLOC1	JLOC1_28315.2	1414	8e-25	1220 - 1279	100	60 / 60	plus
JLOC1	JLOC1_28315.1	1404	8e-25	1210 - 1269	100	60 / 60	plus
Harvest21	ABC12966	1242	3e-25	1164 - 1223	100	60 / 60	plus	ABC12966
Harvest35	U35_6180	1242	3e-25	1164 - 1223	100	60 / 60	plus

Contig Sequence (1242 bp)

>U35_6180 1242 Hv_44K_v2
CAGAAGCCGCGCTCCTACGAGGTGCTCGTCTCCGACGCCGCCCGCTCCCTCGCCGCCGCC
ATCGACGACGGCAGGACCCGCCTCGAGATCGAGTTCCCGCCTCTGCCCAGCAGCATCTCC
TCTTACAAGGGCTCTTCGGACGAGTTCATCGATGCCAACGTCCAGCTCGCTCTCGCTGTT
GTAAGGGACCTCAAGAAGCTCAAGGGGACTCGGTCCTGCATAGTGTTTCCTGATCAACCA
GAGAAGCGAAGGGCCGCGCAGATATTCAAAACGGCTATAGATCAGATCGAGGGTATATCA
ATCGGTTCATTGGATGATCTGCCCACCGGGCCTGTCGATACCTTCTTCAAATCGATAAGA
ATTACCCTTGATTTCGATTTTTCTGATGACAACGAAGATCGATGGAAGTCTGACGAACCA
CCACAACTATATATCTTTATCAACAGCAGCACACGTGACCTTGCATCTATAGAGAAGTAT
GTGGACCAATTTGCTGCCTCTGTACCTGCTGTTCTCTTTAACCTTGAACTAGATACCTTG
CGTTCTGACTTGGGGCTTCTGGGATTCCCCCCAAAAGATTTGCATTACCGGTTTCTTTCT
CAGTTCACCCCAGTATTTTATGTCAGACAGCGTGACTACTCCAAGACAATTGCAGTTACT
CCGTACATAGTGAACTACAGTGGCGCTGTCTTCCGTCAATACCCAGGGCCCTGGCAAGTC
ATGCTTAAGCAGGCTGATGGTTCCTATGCATGTGTTGCGGAGAGTGCATCTCGGTTCACC
TTGGGGCAGGCCAAGGATGAACTATTGAGAGTTCTCGGTTTGCAAGAAGAGGTCGGAAGC
CAGCTTGAATTCCTCAGAAGAGGATACAAGAATGCTACTTGGTGGGAAGAAAATTTCGAT
CAGGAGAAATCACCCGCATGGCGAACTTGAGAGGCAGCTGCTGGTTCAGCGCCGAATTGC
CGACCCGACTTACAAATGGAGATATATAGGCCAAAAAAAAATGTTCATAAAGGTCCCCTG
GAAACAGAGTGTTCACGAACCCTGAGCTGATGGCGCAAAAGAAGCCCACACACCAATATT
GTAGTCATGCAGTGGAGACACTGATATGAATTATGGGAGGAAATTGTCCTTGCCTTTTTT
TTTGCTGATTAATTATGTGCTGAGTATGTACAAGTGAAATGCATGTGACTCTAATATCCC
AGCAAACTGATTTTGAGTATTTCAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_6180 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g02520.1	378	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi3g01550.1	379	0.0
Arabidopsis v10	AT1G73060.1	358	2e-162	\| Symbols: LPA3 \| Low PSII Accumulation 3 \| chr1:27479027-27481258 FORWARD LENGTH=358