barSeed - Barley Seed Development Database

Probe CUST_24441_PI390587928

Source Contig U35_6188

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24441_PI390587928	Hv_44K_v2	TGCATGCCACCATATGCCACTGCATGTCACTTGTGGTTTTGTGTATATCATATGCAGCAG	169	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69078.8	2150	2e-24	341 - 400	100	60 / 60	plus	ABC13305
MLOC	MLOC_69078.1	2215	2e-24	462 - 521	100	60 / 60	plus	ABC13305
MLOC	MLOC_69078.6	2295	2e-24	506 - 565	100	60 / 60	plus	ABC13305
Harvest21	ABC18369	982	3e-25	170 - 229	100	60 / 60	plus
Harvest35	U35_6188	982	3e-25	170 - 229	100	60 / 60	plus

Contig Sequence (982 bp)

>U35_6188 982 Hv_44K_v2
GACTAGACGCAGACAGAGACACTGGACCTTGTCCTCGCATGGAATTGAACCTTGGGGCAT
ATGCGGCCGTGACCTCCTCCTAGAGGGATCGAGCCATCGAGGTGGTGGTGCTGATAACTG
ATAAGAGGTGAGTGGCCTAAGCTGTTCCTCATGCCCAAACGGAGTTCAATGCATGCCACC
ATATGCCACTGCATGTCACTTGTGGTTTTGTGTATATCATATGCAGCAGCGCTCGGCAGA
CAGACTAGTGGTCGGTAGTGCGGCCACCACTCCGGCCGAGACAAAGCGCGTGTGTGTGTG
TGCGTCCAACAACGCTTTCCCCCCGGCTCACAGTCACACCATAGTGGTGAATCCATCCCT
TGCAGGGGGGAGAAGCAGAGCTCCGTTTCCTCTGCTCCGGCGGTTTGGGGTTGGCGTTGC
GCGCATCGCATGCAGCAGATGGCCACCACCGTCACGCTGCTGCTCGGGGCGGCCTCGTCC
CCCGGCCTCGGTGATGGCACCGGCCGGGACGGCTTCCAGTGCTCCCGCCTGCTGCCCAGG
AGGAGGCAGACGCGGCCAAGGTGGGTGCTCTGCTCGCTCAAGTACGGCTGCCTCGGCGTT
GGCGAGCCGGGGGAACCGGGCGGCCGGAGCGCGGCCTCGCCGGTCTACTCCAGCCTGACA
GTCAGCCCGGCCGGCGACGCGGCCGTCGCCGTCGTCTCCTCGGAGCAGAAGGTGTACGAC
GTGGTGGTGAAGCAGGCGGCATTGCTCAAGCGCCAGCTCCGGCCACAGCAGCAGGCGCCG
CCGGCCGTCGCAAGGGAGCTGGACGCGCCGCGCGGCGGGCTCGGAGAGGCCTACGCCCGC
TGCGGCGAGATCTGCGAGGAGTACGCCAAGACCTTCTACCTCGGGACCTTGCTGATGACG
GAGGATCGCCGGCGCGCCATATGGGCCATCTACGTGTGGTGCAGGATGACAGACGAGCTG
GTCGACGGGCCGAACGCGTCGC

Homology of Contig U35_6188 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g51290.4	369	2e-52	protein\|phytoene synthase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi1g29590.1	441	3e-57
Arabidopsis v10	None