barSeed - Barley Seed Development Database

Probe CUST_24433_PI390587928

Source Contig U35_6196

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24433_PI390587928	Hv_44K_v2	CAGGATCAAATTGTATCGACTGGAAATCAATCTTTTTCGCTGTTGTTGTTTGTTGTCAAA	1054	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.932	4.024	1.170	0.620	0.183	0.296
Raw	1270.380	1559.997	397.492	328.196	36.294	61.825

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38770.1	1151	2e-23	1061 - 1118	100	58 / 58	plus	ABC10307 ABC13587
JLOC1	JLOC1_25238.2	1250	1e-23	1072 - 1129	100	58 / 58	plus
JLOC1	JLOC1_25238.1	1197	1e-23	1019 - 1076	100	58 / 58	plus
Harvest35	U35_6196	1128	3e-25	1055 - 1114	100	60 / 60	plus

Contig Sequence (1128 bp)

>U35_6196 1128 Hv_44K_v2
GCCGATGACCGGTTCACCGGCCTGCTTCGCCCGGATCCCTCCTAGCTTCCACCATTAGCG
GCAGGGACCTCGACCGACCGCCATCTGTTCGATCCCGCCCCCCATTCCGGAACCCCAGAA
GAGGAGGAGGAGGAGGAACAAAACGAAAACAAAACAATGGGGTGCTTCCACTCCACGGCC
AGGGCCAGGGCCAGGCGGCGCTACCCGGGCTACGAGGACGACCCCATGCAGCTCGCCGCC
GAGACCGCATTCAGCGTCAGCGAGGTCGAGGCGCTCTTCGAGCTCTTCAAGACAATCAGC
GGATCCGTCATCGACGACGGCCTCATCAACAAGGAAGAGTTCCAGCTTGCATTGTTCAAG
AGCAAGATGGACAATATTTTTGCTAACAGGATATTTGACCTCTTCGATGTCAAGAAAAGG
GGGGCCATTGACTTTGCTGACTTTGTTCAAGCCCTAAATGTATTTCACCCTAGCATTCCA
ATGGAAGAGAAAATTGATTTTTCCTTTAAGCTATATGATATGGACAACACGGGCTTTATT
GAACGAAAAGAGGTCAAGCAGATGCTTATCGCCCTTCTGAGTGAATCAGGAATGAGGTTA
TCAGATGAAACCATCGAGTCAATCCTTGACAAGACATTTTCAGATGCTGATGTGAATCAA
GATGGAAAAATAGATAGAGCAGAGTGGGAGAACTTTGTCTCACGAAATCCCTCCTTGATG
AAGATAATGACTCTTCCATACCTAAAGGACATAACGACCACATTCCCCAGCTTTGTTTTC
AACTCGAAGGTCGACGACATCGTGACATGAGCGCCGTGGATTCTGTGACGTATACAAGGC
CCGCGCGGAGGAAGAGCGGAAGGCATGTACATCTTTGTTAGAGTATATCAATGAGGGAGA
GTGCAATTTTTTTTTTTGTTAGAGCTAAAGCAATAATGCAATGAGGTTAGGAGGTGAGGG
GAGGGTTGTAGTCTGAGAAATTGGCAGGTTGTGGTGATATGAACTTCATCCATATGCTGC
TTGTGTTGTTTGTTGTGAAATGCAATGTTAGTGCCAGGATCAAATTGTATCGACTGGAAA
TCAATCTTTTTCGCTGTTGTTGTTTGTTGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_6196 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g41510.1	214	5e-122	protein\|calcineurin B, putative, expressed
Brachypodium v1_2	Bradi1g78640.1	213	6e-129
Arabidopsis v10	AT4G17615.1	213	4e-108	\| Symbols: CBL1, ATCBL1, SCABP5 \| calcineurin B-like protein 1 \| chr4:9817142-9818995 FORWARD LENGTH=213