barSeed - Barley Seed Development Database

Probe CUST_24432_PI390587928

Source Contig U35_6197

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24432_PI390587928	Hv_44K_v2	GTATTCTATTTTTGTTTTCCAAACGAACCAGCAATAGGTGGTATGGAGATGGTTTCAACT	1709	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.428	1.455	1.206	0.879	0.388	0.405
Raw	2314.877	3701.097	2685.130	3073.983	479.673	545.838

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370750	1781	2e-24	1722 - 1781	100	60 / 60	plus	ABC14111
JLOC1	JLOC1_19491.1	618	8e-25	526 - 585	100	60 / 60	plus
Harvest21	ABC14111	1769	3e-25	1710 - 1769	100	60 / 60	plus	ABC14111
Harvest35	U35_6197	1769	3e-25	1710 - 1769	100	60 / 60	plus

Contig Sequence (1769 bp)

>U35_6197 1769 Hv_44K_v2
CAGCAGCAACGAAAACCTGCTCCCAGGGTTCGCGCCGCCACCGCCGCCGCCGCCGCACTG
CTCCCCCGACCAGCGAGCTTCCGAAAGCTCCATCCTCCCTTGGGAAGCCCAGCCCGCACC
GACCCCCTAGCCCCACGCCACGCCATGGCAAGCTCCGGCGAGGACAGGGGCGTGGTGGTG
GACATCCGGTCCGCGGCGGAGTCGGCGGGCGACGACGGCGCGCGCGACGCGCCGCTCCAC
GTGGTCGAGTCCCTCTGCATGCGCTGCGGCGAGAACGGCACGACGAGGATACTGCTCACT
CTGATCCCGCACTTCCGGGAGGTTGTTCTGATGGCTTTCGAGTGCCCGCATTGCGGCGAA
AGGAACAACGAGGTTCAGTTTGCTGGGCAGCTCCAGCCAAAGGGATGCTGCTACACTTTG
GAAGTCCCCAAGGGGCAGCCCGAGGTACTGAACCGGCAAGTTGTGAAATCTGATTCAGCA
ACTATCAAGATTCCAGAACTAGACTTTGAGATTCCTCCAGAAGCTCAACGTGGAACACTT
TCAACAGTGGAAGGGAGCATTATGCGAGCTGTTAGTGAGTTAGAAGCACTTCAGGATGAA
AGAAAGAAAGTGGATCCTCAAAAGGCTGAAGCTATTGAACAGTTCTTAGTAAAATTGAGA
TCTCTTGGATCAGGGGAAGCTGCTTTTACCTTTATTCTTGATGATGCTTCTGGTAACAGC
TTCATCGAGAACCCGAATGCACCTTCACCAGATCCTTTATTATCTTTGAGATTCTATGAG
AGGACATATGAACAACAAGCAGCACTCGGTTTTCTTGCTGAACCAACCAAAGAATCTGGA
GACTCTTCTCAGGATGCTTCAACAGTAGAAGGAAACTCTGGTGGGCCGCANAGGATTCCA
CATGGTTCAGTTGGAGCTGTTGCAGGTCGCCGTGCTATCGCTCAGGGAAACTCTGATGAA
ATTACTGCAGCGCTTTGTAGATATTCAGCACCAGAAGAGGTTGATACTTTACCATCAACA
TGTGCGGCATGTGCTACTGAGTGTGTCACACGATTCTTTTCTACAAAAATCCCATATTTC
CGAGAGGTGATTGTTATGGCTACATCATGTGATGTGTGCGGCTATCGCAACTCAGAGTTG
AAGCCTGGTGGTGAAATCCCAGCTAAAGGAAAGAAAACAACACTGATTGTGCGAAGTGTA
AAAGATCTTAGTCGTGATGTCATAAAGTCAGATTCAGCAGCAGTTAGTGTACCTGAACTT
GAGTTGGAGCTGTCAAGCGGAACACTGGGTGGCATTGTCACAACAGTTGAAGGTTTAATT
GTGAAAATATGCGAGGCACTGGAGAGAGTTCATGGATTCCAGTTGGGTGACAGTACATAT
GAATGGAAGAAGAAGAAATGGGATGGTTTCACAGAGAGATTAGCAAAGCTTCTAAATCTA
GAAGAGCCATGGACTTTAATTCTTGATGATGCATTGGCGGCTTCATTTATTGCTCCAGCG
ACAGATTCGCTAGAAGATGATAAACAGCTAACAATTGAGGAGTATGAGAGGAGCTGGGAG
CAAAACGAGGAGCTGGGCTTGAATGACATGGACACGTCCTCTGCGGACATGGCCTACAAC
ACCACGAGCGCGTCATAATCAGGCTTGGTTTAGTCTTCTTGTTGTGCGCAATGTTGTAAC
CTGTAATTTGAAATTTGATACTTTGTGGTGTATTCTATTTTTGTTTTCCAAACGAACCAG
CAATAGGTGGTATGGAGATGGTTTCAACT

Homology of Contig U35_6197 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g36774.1	502	protein\|zinc finger family protein, putative, expressed
Brachypodium v1_2	Bradi3g38220.1	497
Arabidopsis v10	AT5G22480.1	493	ZPR1 zinc-finger domain protein \| chr5:7451643-7456168 REVERSE LENGTH=493