barSeed - Barley Seed Development Database

Probe CUST_24426_PI390587928

Source Contig U35_11203

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24426_PI390587928	Hv_44K_v2	AAAGAGTCACCGCAGGGTATGAGGAGGTATCATCGGAAGTTGAAAATTTTGTCCTCCAAA	621	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.077	1.377	1.239	1.011	0.416	0.365
Raw	447.505	917.134	699.586	898.677	130.337	123.669

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21293.1	4101	7e-23	177 - 236	98	59 / 60	minus	None
MLOC	MLOC_21293.2	3443	7e-23	71 - 130	98	59 / 60	minus	None
MLOC	MLOC_21293.3	3324	7e-23	71 - 130	98	59 / 60	minus	None
JLOC1	JLOC1_14779.2	3431	4e-23	3231 - 3290	98	59 / 60	plus
JLOC1	JLOC1_14779.1	3370	4e-23	3170 - 3229	98	59 / 60	plus
Harvest35	U35_11203	693	3e-25	622 - 681	100	60 / 60	plus

Contig Sequence (693 bp)

>U35_11203 693 Hv_44K_v2
GGCGAATTGGGCCCTTTCGAAGATGCTCGAGCGGCCGCTGGCTACCCTCCCGTACGAGGA
CCAGACGCCTATCATAGGGAACTACCAGCAGAAGAACAAGAGGGTCGTGTATGACACGGT
GCGCTCTGGGCTAGGTTTTGCTGACGAAGATTGCACCTACAGCATGTAACAAAAATGGGA
GCAGAAACTACTGAGAGTGGAATTTTATTCAACTGTCTGCAAAATGTAACTTAATTAAAA
TGGAGGTTTCTTTTTTCTCTGAGAATGTATGCCAATAATAGACATCATTGTGTATGTTGG
AGCGGCCGCTGCACAATTTTGATCTGTATGAATGGTGTAAAAGCATTTTTATAACCAACA
TGTACAATAGAGAGACAGAGGAGAAGGGGAGCGCGTGAAGAGGGAGGAAGAGACTTTGAG
TGAGTGAAACATTCATTTATAGTTGGATTGGTTGGTGAGACGCACACATAATCTGCTGCT
CCTGCTGCTGCTGCCTGATTTATTCTTGTTCCTGAAGTTGGCATGTCGTTTTGTGTATAT
AACTCTCTCCTTTTTAGTGGTTTTACGCTACATAGATGATGTGTTTTTGCTGAGTTTTTG
TAACGAACGCTACTCTTGTTGAAAGAGTCACCGCAGGGTATGAGGAGGTATCATCGGAAG
TTGAAAATTTTGTCCTCCAAAAAAAAAAAAAAA

Homology of Contig U35_11203 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None