- Probe CUST_24424_PI390587928
- Source Contig U35_11205
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_24424_PI390587928 | Hv_44K_v2 | GCGTGTTGGTGAATATTTTGTTGAATTATTATCGGATCATATTGCTTGGTGAATCGTGTT | 344 | GeneList: yellow MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 9.206 | 6.630 | 2.356 | 0.352 | 0.105 | 0.087 |
Raw | 697.441 | 781.134 | 247.311 | 56.579 | 4.295 | 3.836 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
Harvest21 | ABC35349 | 432 | 3e-25 | 344 - 403 | 100 | 60 / 60 | plus | ABC35349 |
Harvest35 | U35_11205 | 433 | 3e-25 | 345 - 404 | 100 | 60 / 60 | plus |
Contig Sequence (433 bp)
>U35_11205 433 Hv_44K_v2 CCGGGTCTGCAGGNGTTCGTTGAAAATTTCCTCCCGAAGGACAGCAGGAAGATGACACTG TGGGACCCGCAAGCGAAGCCATGGAAGGTGTCGTACGAGTATACCGGTGGAGAACGTCCC CGTGCAGCGTTCAGCACTGGGTGGGGCGTGCTAGCCATGGAGAACAACCTGGAGAAGTGG GACATCTGCATCTTGGAGCTCCTGGACCAGGAGGACAACATCAAGCTGCACGTCTTCAGG GCCGTGCTGGAGATTACCCCCTTCGTCCTAGCCCCAAAACATAGTCCACAGGGTTGTCCA TAGCCCTTTGTTGTTGTTCTAGTAATATCTTCGATGATGGAGGCGCGTGTTGGTGAATAT TTTGTTGAATTATTATCGGATCATATTGCTTGGTGAATCGTGTTTGTGACTGTTTTAAAA AAAAAAAAAAAAA
Homology of Contig U35_11205 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |