- Probe CUST_24424_PI390587928
- Source Contig U35_11205
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_24424_PI390587928 | Hv_44K_v2 | GCGTGTTGGTGAATATTTTGTTGAATTATTATCGGATCATATTGCTTGGTGAATCGTGTT | 344 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 9.206 | 6.630 | 2.356 | 0.352 | 0.105 | 0.087 |
| Raw | 697.441 | 781.134 | 247.311 | 56.579 | 4.295 | 3.836 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC35349 | 432 | 3e-25 | 344 - 403 | 100 | 60 / 60 | plus | ABC35349 |
| Harvest35 | U35_11205 | 433 | 3e-25 | 345 - 404 | 100 | 60 / 60 | plus |
Contig Sequence (433 bp)
>U35_11205 433 Hv_44K_v2 CCGGGTCTGCAGGNGTTCGTTGAAAATTTCCTCCCGAAGGACAGCAGGAAGATGACACTG TGGGACCCGCAAGCGAAGCCATGGAAGGTGTCGTACGAGTATACCGGTGGAGAACGTCCC CGTGCAGCGTTCAGCACTGGGTGGGGCGTGCTAGCCATGGAGAACAACCTGGAGAAGTGG GACATCTGCATCTTGGAGCTCCTGGACCAGGAGGACAACATCAAGCTGCACGTCTTCAGG GCCGTGCTGGAGATTACCCCCTTCGTCCTAGCCCCAAAACATAGTCCACAGGGTTGTCCA TAGCCCTTTGTTGTTGTTCTAGTAATATCTTCGATGATGGAGGCGCGTGTTGGTGAATAT TTTGTTGAATTATTATCGGATCATATTGCTTGGTGAATCGTGTTTGTGACTGTTTTAAAA AAAAAAAAAAAAA
Homology of Contig U35_11205 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |