barSeed - Barley Seed Development Database

Probe CUST_24415_PI390587928

Source Contig U35_11214

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24415_PI390587928	Hv_44K_v2	ATCATGGGGCTGCTGCTCATCCAGGACCACGGCGAGAAGGAGATGATACGCCTCGCCTTC	83	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361977	3058	2e-24	343 - 402	100	60 / 60	plus	ABC15338
MLOC	MLOC_33638.2	1745	2e-24	815 - 874	100	60 / 60	plus	None
MLOC	MLOC_33638.1	1781	2e-24	825 - 884	100	60 / 60	plus	None
MLOC	MLOC_33638.5	522	7e-23	317 - 373	100	57 / 57	plus	None
MLOC	MLOC_33638.4	1061	7e-23	318 - 374	100	57 / 57	plus	None
MLOC	MLOC_33638.3	416	3e-21	322 - 375	100	54 / 54	plus	None
JLOC1	JLOC1_21770.1	1577	8e-25	624 - 683	100	60 / 60	plus
Harvest21	ABC34726	532	3e-25	84 - 143	100	60 / 60	plus
Harvest35	U35_11214	576	3e-25	84 - 143	100	60 / 60	plus

Contig Sequence (576 bp)

>U35_11214 576 Hv_44K_v2
GGTCGATCGGCATGGACGCCTACGAGGCGACCAAGGTGGTGTTCGCGCGGATCCAGGGGC
TGGACCCGGACCACGCGGCCAAGATCATGGGGCTGCTGCTCATCCAGGACCACGGCGAGA
AGGAGATGATACGCCTCGCCTTCGGCCCGGAGGCGCTGCTGCTCGCCGTCATGGCCAAGG
CGCGCAAGGACCTCGGCCTGCTCCCGGCGTCCTCGGGCCCCGGCACGCCCACCTCCGCCG
CGGCCACCGGCCACTCGCCCTTCATGCTCTCGCGCCAGAACTCCGGCCGCGGCGGCGGAG
GCACGGCGCCCTCGCCGCTCTCGGTCTCGTCGCCCTCCTCGTGGGCCCCGCCCCCGGTGT
TCTCGAGGAGCAACAGCGTCAGCAATGGCAGCGCCGCGGAGGAGATGGCGGGCGTCGGGG
AGGAGCTGATGAGCCCAGCCAACGGCCCGCAGTCGCCCTTCTTCGGCGGGGGCGGGGACT
CGCTGATCCTCGACGAGCTCCACCTGCAGGACCAGCTCGCGTTCCTCAGCGAGGGAGGCA
TGGGCGGGGGAGGGCGCCAGCTCCCGGTGTTCGACA

Homology of Contig U35_11214 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g48410.2	683	8e-72	protein\|RNA-binding zinc finger protein, putative, expressed
Brachypodium v1_2	Bradi1g17510.1	700	4e-75
Arabidopsis v10	None