barSeed - Barley Seed Development Database

Probe CUST_24413_PI390587928

Source Contig U35_11216

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24413_PI390587928	Hv_44K_v2	CCATATACCATCGAGCGCGTATATTACTCTTTAGGGGTGCTGAACGTAAATGGACAGATG	683	GeneList: brown4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.529	1.175	1.258	0.845	0.485	0.410
Raw	699.685	722.573	788.512	759.474	169.826	154.584

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363003	3262	2e-24	2313 - 2372	100	60 / 60	plus	None
MLOC	MLOC_59198.2	2156	2e-24	56 - 115	100	60 / 60	minus	ABC19325
MLOC	MLOC_59198.1	2446	2e-24	346 - 405	100	60 / 60	minus	ABC19325
JLOC1	JLOC1_38510.3	2381	8e-25	2066 - 2125	100	60 / 60	plus
JLOC1	JLOC1_38510.2	2266	8e-25	1951 - 2010	100	60 / 60	plus
JLOC1	JLOC1_38510.1	1884	8e-25	1569 - 1628	100	60 / 60	plus
Harvest21	ABC24442	746	3e-25	684 - 743	100	60 / 60	plus
Harvest35	U35_11216	746	3e-25	684 - 743	100	60 / 60	plus

Contig Sequence (746 bp)

>U35_11216 746 Hv_44K_v2
GAGCTTTGCTGATTCTGCGGAGGTGTTTAGCATTGAAGGTGGTGATAATGAAGAGGATGG
CATCAGTGATGAATCTAGATGTGTGCATGGTCGCTTTACCCCAGAGGAAGACGCCACCCT
CATGGAAGCTATGAAGGGTTACACAGAGATGAAGGAACTGGGGGAGAAAGGTTTAGAGAT
GATTGGATCGTGTCGTAAATACCCAGAGCTCAAGGGTTGTTGGGATGATATAGGGAAATC
GTTACCCCATAGACCTCACTGGGCCATATACAGGCGAGCACATACATTACTCTATAGGAG
CATCGGATGTAAATGGACACATGAAGAAAAAGAGCAGATTCGGCGGTTTGTTGAGAAAAA
TGGCACGGATTGGAAAACACTGGCACAGGAACTTGGAAAGAGTGAGTTCCATGTAAAACA
TGCTTGGAGAAGAATAAAACCTAAGAAGAAAAAAGGTGCCGATGATGAAGAGGATGTCAG
CGGTGGTGAATCTGAACTTGTACATGGACATCGATTTACCGCAGAGGAAGATGCCATCCT
CATGGAAGCTATGAGGGATTACGCAGAGCTGAAACAACTGGGAGAGAAAGGCTTGGAGAT
GATTGGGTCTTCTAGTAAATACCCAGAGCTCAAGGGTTGTTGGGATGATATAGCGGAATC
GTTACCCCATAGACCGCGCGAGGCCATATACCATCGAGCGCGTATATTACTCTTTAGGGG
TGCTGAACGTAAATGGACAGATGACG

Homology of Contig U35_11216 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g19980.1	640	4e-62	protein\|MYB family transcription factor, putative, expressed
Brachypodium v1_2	Bradi1g33410.1	618	6e-68
Arabidopsis v10	None