barSeed - Barley Seed Development Database

Probe CUST_24406_PI390587928

Source Contig U35_11226

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24406_PI390587928	Hv_44K_v2	GCGGCTGCCGCCGGTGGCGGCAGGAAGATGGCGTCCCACGGCGAGGGCGCGAATCTCAAG	169	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358827	2939	2e-24	36 - 95	100	60 / 60	plus	ABC05018
Harvest21	ABC26621	428	3e-25	170 - 229	100	60 / 60	plus
Harvest35	U35_11226	429	3e-25	170 - 229	100	60 / 60	plus

Contig Sequence (429 bp)

>U35_11226 429 Hv_44K_v2
CTTCGCTCTCTCGGTCAGCAGTGGTAGGCCGGCTCGCAGCTGCCATCGACGACACCCGCG
CGCGGAGCGCGCGGCGTCCGTTGTTTCCATGGCTCCATCCCGCGCTCGCTCCGGCGCCGG
CGCCGCGCTGCCCGTGGTGGTGGCGCTCCTCCTCCTGCTCGCCGTCGTCGCGGCTGCCGC
CGGTGGCGGCAGGAAGATGGCGTCCCACGGCGAGGGCGCGAATCTCAAGGCAGCTCCCGG
CGCGCCTGCGGCGGGCGGTGAGGCGGAGCAGTTCCGGGGCAAGGCGCGGCTGCCGAGCTT
CGCGGCGCCGCGCCGCTACGAGCTCTCCCTCCGCCCCGACCTCGTCGCCTGCACCTTCTC
CGGCTCGGTGGCCATCTCCGTCGCCGTTTCCGCGCCCACCCGCTTCCTCGTGCTCAACGC
CCTCGACCT

Homology of Contig U35_11226 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None