barSeed - Barley Seed Development Database

Probe CUST_24396_PI390587928

Source Contig U35_23207

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24396_PI390587928	Hv_44K_v2	AAAGGGTCAGACTCCAAGTTCGAGAATGCCGTGCTAAAGAAGCTCGACGCCCAGCTCAGC	355	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369753	2145	7e-23	365 - 424	98	59 / 60	plus	ABC04312 ABC26698 ABC39161
MLOC	MLOC_65133.1	1411	7e-23	767 - 826	98	59 / 60	plus	None
JLOC1	JLOC1_42841.1	1262	4e-23	618 - 677	98	59 / 60	plus
Harvest21	ABC18849	457	1e-23	355 - 414	98	59 / 60	plus
Harvest35	U35_23207	459	3e-25	356 - 415	100	60 / 60	plus

Contig Sequence (459 bp)

>U35_23207 459 Hv_44K_v2
GGCATCCACCTCCGCCACCGCCGCCGTCGCCGCCGCCGCCTCCCGCCTGCTCCTGCGCCG
CGCGCCGCACCTCCTGCGCCGACTCCCCCGCGCCGCGCCGTCCGCCCGCCCCTACTGCTC
CTCGTCGTCGTTCGGCGCCGCCGCCGCAGCCCCTCTCCGCCGCCCGTTCGGGCACCGCGC
CAGGATGGGGCACACCTCCGCCTCCGCGTCCGCGTCCGCCGCCGTCCCCGCGCTCGGGCT
CACCAAGGCCAACGCCGTGGAGCTCCCCCAGGTTGCTTTCACGGGCAAGGACATTGAGTT
CTCCGACTGGAAGGGCGACATCCTCGCCGTCGCGGTCACCGAGAAGGATCTGTCCAAAGG
GTCAGACTCCAAGTTCGAGAATGCCGTGCTAAAGAAGCTCGACGCCCAGCTCAGCGGTCT
GCTCTCGGAGGCCTCGGCCGAGGAGGATTTCACCGGGAA

Homology of Contig U35_23207 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None