- Probe CUST_24396_PI390587928
- Source Contig U35_23207
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_24396_PI390587928 | Hv_44K_v2 | AAAGGGTCAGACTCCAAGTTCGAGAATGCCGTGCTAAAGAAGCTCGACGCCCAGCTCAGC | 355 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK369753 | 2145 | 7e-23 | 365 - 424 | 98 | 59 / 60 | plus | ABC04312 ABC26698 ABC39161 |
MLOC | MLOC_65133.1 | 1411 | 7e-23 | 767 - 826 | 98 | 59 / 60 | plus | None |
JLOC1 | JLOC1_42841.1 | 1262 | 4e-23 | 618 - 677 | 98 | 59 / 60 | plus | |
Harvest21 | ABC18849 | 457 | 1e-23 | 355 - 414 | 98 | 59 / 60 | plus | |
Harvest35 | U35_23207 | 459 | 3e-25 | 356 - 415 | 100 | 60 / 60 | plus |
Contig Sequence (459 bp)
>U35_23207 459 Hv_44K_v2 GGCATCCACCTCCGCCACCGCCGCCGTCGCCGCCGCCGCCTCCCGCCTGCTCCTGCGCCG CGCGCCGCACCTCCTGCGCCGACTCCCCCGCGCCGCGCCGTCCGCCCGCCCCTACTGCTC CTCGTCGTCGTTCGGCGCCGCCGCCGCAGCCCCTCTCCGCCGCCCGTTCGGGCACCGCGC CAGGATGGGGCACACCTCCGCCTCCGCGTCCGCGTCCGCCGCCGTCCCCGCGCTCGGGCT CACCAAGGCCAACGCCGTGGAGCTCCCCCAGGTTGCTTTCACGGGCAAGGACATTGAGTT CTCCGACTGGAAGGGCGACATCCTCGCCGTCGCGGTCACCGAGAAGGATCTGTCCAAAGG GTCAGACTCCAAGTTCGAGAATGCCGTGCTAAAGAAGCTCGACGCCCAGCTCAGCGGTCT GCTCTCGGAGGCCTCGGCCGAGGAGGATTTCACCGGGAA
Homology of Contig U35_23207 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |