barSeed - Barley Seed Development Database

Probe CUST_24385_PI390587928

Source Contig U35_23211

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24385_PI390587928	Hv_44K_v2	ACTGCGAGTACTGCCTCAGGGCCGACATACCTGGTGGAAGGAAGTGCGACGTGGAGGTGA	301	GeneList: plum1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.044	0.037	0.521	1.353	1.667	1.804
Raw	3.467	3.947	83.059	359.769	148.953	176.036

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52605.1	1036	2e-24	406 - 465	100	60 / 60	plus	None
JLOC1	JLOC1_33727.1	1194	8e-25	406 - 465	100	60 / 60	plus
Harvest21	ABC16836	525	3e-25	302 - 361	100	60 / 60	plus
Harvest35	U35_23211	526	3e-25	302 - 361	100	60 / 60	plus

Contig Sequence (526 bp)

>U35_23211 526 Hv_44K_v2
GCCTTCCCCACCAGCCAGCCAGCATCAATGCCGAGGCGGGCGATCGAGGTCCGGGCCGAC
GGCGCCGCGCCCAAGTGGTGCATGTCGCTGCTGGAGAACACGTTCACGGCGTTCCTCAAG
TCCCCCGGCGCCGACGCCGACGCCAAGGCCGTGTTCGCGGAGGGGTCCCTCTTCAGCCCC
TACCTCTTCGGCAAGTTCTTCGACCCGGCCGACGCGTTCCCCATGTGGGAGTTCGAGTCG
GATGTGCTGCTCGCCGCGCTCCGCCGCGGCGCCAGGACCTCCGTCCACTGGTCCGAGAAC
GACTGCGAGTACTGCCTCAGGGCCGACATACCTGGTGGAAGGAAGTGCGACGTGGAGGTG
AGCGGCGACGGCGCGCGGGTGGTGGACGTGAGCGGGCTGTGGCGGGTGCCGCCGGCGGAC
GGCCGAGACTGGCGCGCCGGACGGTGGTGGGAGCACGGCTTCGTGCGGCGCGTGGAGCTG
CCGGAGGACGCGGACGGAGGCAGGGTGGAGGCCTACTTCGACGACG

Homology of Contig U35_23211 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g42120.1	204	5e-90	protein\|heat shock protein, putative, expressed
Brachypodium v1_2	Bradi2g20767.1	190	2e-90
Arabidopsis v10	None