barSeed - Barley Seed Development Database

Probe CUST_24383_PI390587928

Source Contig U35_23213

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24383_PI390587928	Hv_44K_v2	GTGTATAGATATGTGACTCAACATTGTCCTCAGAAGTAAAGCAAATTGATGTGGCAAAAA	941	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50473.1	1763	7e-23	64 - 120	100	57 / 57	minus	ABC17746
JLOC1	JLOC1_32204.1	1712	4e-23	1572 - 1628	100	57 / 57	plus
Harvest21	ABC17746	1013	3e-25	942 - 1001	100	60 / 60	plus	ABC17746
Harvest35	U35_23213	1013	3e-25	942 - 1001	100	60 / 60	plus

Contig Sequence (1013 bp)

>U35_23213 1013 Hv_44K_v2
GACAAAGCTATCCATACAAAATGCAAGGCAGGCAAAGGAGTTATTAATTGCTCAGGAGAT
GGCACATTCCAGGGTTCCTGTTAGAAAGGGGCGTCCAGCAGGTAGTAGGGGCAGGGATGA
GGTTGGGACCTGGAGTCTTGATTTAGAGGATATGAAGATGGAGCTGCTGGCGCGAAAAAA
GAGGGAAGCTGCTCTAGAAGCAGCTTTGGTAGAGAAGGAGCTTCTTGAAGAGGAGTACAA
GAAGAAGTTTGATGAAGCAAAGAAAAAAGAGCTTTCTCTAGAAAATGATCTAGCAGGCAT
GTGGGTTCTTGTTGCTAAGTTGAAGAGAGGGGCTTTCAGCATATCTGATTTAAATGTTGA
TGACCGGTCTGTCAATCTAACTGACATAACTAATGATATAAAGGAAAACAAAGGTGATAC
AAATGTAGCTCTAGTTGAGAAACAAGTGCCAGATGATACTTTGAAGTCATTGACCGCAGA
AGAATGTAGAAGTCCAGAATTTGAACCTCTTCTTGTTCGTCTCAAGGCTAAAATTCAGGA
GATGAAGGAGAAGGAAACCGATCCCCTGAGTGATAAAGATGTCAATTCCCATGTCTGCAA
AGTATGTTTTGAATCCGCAACTGCTGCAGTTTTGCTTCCTTGTCGGCATTTTTGCTTGTG
CAAGCCTTGCGCACTTGCCTGTTCGGAATGCCCTCTGTGCCGCACACGAATCGTAGACAG
GATAATTACCTTCACGTAGATCACTTGTTAGCCTAAGGAAACTTTTGACGCACCCAATCT
CTCCCTGTAAAATCACCAACCGTATATGTTCCTTTTTCTCTGTAGCAAAGAAGGTTACTT
TTATGTTCCTTCTATGTTGTATTGCCATTCGTTTGATTTCCCTATATAGCTTTACCTTGG
CTCCTTGTTGTATTGAGAAGTTCAGCGACTTCTCAACAAATGTGTATAGATATGTGACTC
AACATTGTCCTCAGAAGTAAAGCAAATTGATGTGGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_23213 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g36880.1	1060	6e-111	protein\|kinesin motor domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g30547.2	1047	7e-116
Arabidopsis v10	None