barSeed - Barley Seed Development Database

Probe CUST_24381_PI390587928

Source Contig U35_23215

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24381_PI390587928	Hv_44K_v2	ATATAGTCAGGCCATCGCAAGCGTAAAGCAAACTCCTGCCTACAGAAATAGGTTGAAAGC	428	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.470	1.011	1.065	0.955	0.554	0.456
Raw	517.372	516.070	514.643	704.619	145.725	133.479

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7419.1	1351	2e-24	502 - 561	100	60 / 60	plus	ABC16058
JLOC1	JLOC1_4891.1	1600	8e-25	536 - 595	100	60 / 60	plus
Harvest21	ABC17070	495	3e-25	429 - 488	100	60 / 60	plus
Harvest35	U35_23215	495	3e-25	429 - 488	100	60 / 60	plus

Contig Sequence (495 bp)

>U35_23215 495 Hv_44K_v2
CCGCCGTCCATGGCCGCCGCCGCCGCCCCCCTCCTCCTCCTCCTCGTCGCCGCCCTCCTC
CTCCCGGCCTCCGACGCCATCTACTGCGACGAGGACGACTGCTACGACCTCCTCGGGGTG
AAGCAGGATGCCAACGCGTCGGAGATCAAGAAGGCCTACTACAAGCTCTCCCTCAAACAC
CACCCGGACAAGAACCCCGACCCGGAGTCCCGCGCGCTCTTCGTCAAGGTCGCCAATGCC
TACGAGATACTCAAAGATGAAGAAACTAGGGAGAAGTATGACTATGCTGTTGCACATCCA
GAGGAGTTCTTCTACAACACTGCTCAATACTACAGGGCTTACTACGGATATAAAACGGAT
ACCCGTTCTGTGTTGGTTGGCCTTCTTTTAATTGTGTCAGCATTCCAATACATAAACCAG
TTGACATCATATAGTCAGGCCATCGCAAGCGTAAAGCAAACTCCTGCCTACAGAAATAGG
TTGAAAGCATTGGAG

Homology of Contig U35_23215 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g15590.1	310	5e-84	protein\|heat shock protein DnaJ, putative, expressed
Brachypodium v1_2	Bradi2g13367.1	335	1e-87
Arabidopsis v10	AT1G61770.1	300	7e-73	Chaperone DnaJ-domain superfamily protein \| chr1:22810220-22812370 FORWARD LENGTH=300