barSeed - Barley Seed Development Database

Probe CUST_2437_PI390587928

Source Contig U35_2030

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2437_PI390587928	Hv_44K_v2	CCTAATAATGTAACAACAACAACAACCTAGAGTGAGTGATGTTTCAGCTGCTGCAAAAAA	1445	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.225	1.398	1.156	0.906	0.298	0.335
Raw	470.547	852.103	606.811	756.882	85.001	104.015

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36358.1	1654	9e-22	1442 - 1496	100	55 / 55	plus	ABC07721 ABC37899
JLOC1	JLOC1_23398.1	1635	5e-22	1443 - 1497	100	55 / 55	plus
Harvest21	ABC07721	1488	3e-25	1418 - 1477	100	60 / 60	plus	ABC07721
Harvest35	U35_2030	1516	3e-25	1446 - 1505	100	60 / 60	plus

Contig Sequence (1516 bp)

>U35_2030 1516 Hv_44K_v2
TCGTGTTTTGTTGGCCTACTGAACCTTCCTTCCATTCGACTCCACTCCACTCTCCCACCC
CACCCTCACCCTCGCCTCGCCTTTTTAGAGAGAGAAACACGAGCTCCCCCACCGAGCCGG
TAGAGAGAGAAACCCAGGTCCAGGCCGAGCTTTCGCCGTAGCGGAGGAGGAGGAGATGGA
GAGGCCGGCGCCGGTGAGGAAGTCCCACACCAACACGGCCGATCTGCTGGCGTGGCCGGA
GGGCGCGCAGCCGGAGCTCGTCGACGGGGCCACGCCGCCGCCCAACCGCCGCCCGCACCA
GCCGTCGGAGGCGATCCACAAGGTGGTGTTCGGCGGGCAGGTCACGGAGGAGGAGGCCGA
GAGCCTCAACAAGAGGAAACAATGCTCCGCTCCCAAGTGGAAGGAGATGACAGGAAGTGG
CATATTTGCAGCTGGAGGTGAGGCTGAGGAAGATGAATCCGCTAACGCTTCTGCGACACC
CGTCCGAACAGCTTCAAAGAATTATCAGGCTATCAGTACCATAAGCCACATCTCCTTTGC
TGAGGACGAAAGTGTTTCTCCCAAGAAGCCAACCTCCATAGCCGAGGTGGCAAAGCAGCG
TGAGCTAAGCGGCACGCTCCAGAGCGAGGATGACAGCAAGCTGAAGAAGCAGGTATCCAA
TGCCAAATCAAAGGAGCTCAGCGGGCACGGCATCTTTTCTCCTCCGGAGGACCCCAGGCC
ACGCAACTCGGAGAACGGCTCCACCTCGCAGACGCCAGGGAAGAACGCACAGGTGAGCAG
CATCAAATTCGGAGAGGCCGACGACTCCGACAGCATGGTTAAGACGGCGAAGAAGATCCC
GACGAAGAAGTTCAACGACCTGACGGGCAACAACATCTTCAAAGGCGAAGCCGCGGAGGC
CCCTGGCACGGCGGAGAAGCAGCTGAGCGACGCCAAGCTCAAGGAGATGAGCGGCAGCAA
CATCTTTGCGGACGGCAAGGCGCCGTCCCGAGACTTCCTCGGTGGCATCCGCAAGCCCCC
CGGTGGCGAGAGCAGCATCGCGCTGGTCTAACAGCGACGACAACCCCTGATGGACAGGAC
AGAACAGACATAGCCTACAACATTCTTCGTTCACCCTTCGCCCCGTCGCCGTCTCTCGAT
CTAGGAGTGATTTCTAGGGAGCTTTTTTTCTTCTTCGTCGTCGTTCGTTGGTGGGACTGA
TCTGCGATCTCGATTGAACTTCTGGTTTGGTTTTTTCCCGTTCCTTTTTCCTAAAAAAAA
AAACTTTCCCTTTCCTTTACTCGCTGTTAATTAATCCTGATGGTGTGGTTAGTGGCTGCG
GCAAGCAAGCAACGATGATGGCTCGCTCGTTCGTTCGTTCGTGCGTCGTCTGGTCGCCTC
TAAGTTAACAACAATTGGTGTGCATTTTGCTGCGTTTGTGGTTGGGTTTGGTTGGTCGTG
GCGTACCTAATAATGTAACAACAACAACAACCTAGAGTGAGTGATGTTTCAGCTGCTGCA
AAAAAAAAAAAAAAAA

Homology of Contig U35_2030 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g43070.1	289	4e-158	protein\|expressed protein
Brachypodium v1_2	Bradi1g21410.1	295	4e-161
Arabidopsis v10	AT1G35780.1	286	1e-80	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78150.2); Has 145 Blast hits to 144 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr1:13277778-13280113 REVERSE LENGTH=286