barSeed - Barley Seed Development Database

Probe CUST_24360_PI390587928

Source Contig U35_17892

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24360_PI390587928	Hv_44K_v2	ATTGGTCACTGCTTGTGCACTTTAAACATCATGATATCAGAGACGTAATTGGGGTGCAAA	839	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.646	1.606	1.134	0.907	0.335	0.331
Raw	599.826	922.567	565.143	705.082	93.342	100.119

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_54043.1	1039	1e-23	854 - 911	100	58 / 58	plus
Harvest21	ABC08326	913	3e-25	840 - 899	100	60 / 60	plus	ABC08326
Harvest35	U35_17892	913	3e-25	840 - 899	100	60 / 60	plus

Contig Sequence (913 bp)

>U35_17892 913 Hv_44K_v2
GCCGCAAAAGAAGAACACTACTACTACGACCATCGATGGCCGTCCGGTGTCACGCTGCTG
CTACCTTGGTCTCGTCCCGAGCGCACCTGTCCTCCTACCTCCCGCCCCTCCTCCCCTCCG
CGCGACCCCGATCCACGACAACCCGCAGCTGCGGCGGCAGCAGTTACAGGCGGACCGCCG
TTCGCGCCATGGGCGCCGCGCCGTCGTCGCCCTCGCCGTCCGGACAAGCCCCAGGGAAAG
TGGATAACGCATCTCTGAGTGATGAGGAGTTGAAGAAGCGCCTCACAAAAGAACAGTATT
ATGTCACTCGGCAGAAGGGAACTGAGAGGGCATTCACAGGGGAATACTGGAACACTAAAA
CCCCAGGCGTCTACCACTGCATCTGCTGTGACACCCCTCTGTTTGAGTCATCTACCAAGT
TTGATAGTGGTACTGGATGGCCGTCCTATTATCAGCCGGTTGGCGACAATGTGAAAAGCA
AGCTTGATATGTCAATCTTCTTCATGCCTCGGACCGAGTCCCTGTGCGCTGTCTGCGACG
CTCATCTCGGGCATGTTTTCGACGACGGGCCACCGCCGACGGGAAAGAGATATTGCATCA
ACAGCGCTTCTCTGAAGTTTAAGCCCCAGTAGTCCCTGGAAGAAGAATCAAGATGAAAGC
ACCAGCGCGCCGCATGCAAATTTTCGTTTTGGTATGAACTATTTCCAGTGTAGTCTGTAG
TAGCCTAGTCCGCCCGGTTTGCACATGTAAACTGATAATTTTCAGGTTTGTAAAGCCATT
TGTCCGAAACATCTGCATGTTCCTCCATGAGTGTCAGGAGTTCCTGTGACTGTGGGGCAA
TTGGTCACTGCTTGTGCACTTTAAACATCATGATATCAGAGACGTAATTGGGGTGCAAAA
AAAAAAAAAAAAA

Homology of Contig U35_17892 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g27760.1	215	8e-82	protein\|peptide methionine sulfoxide reductase msrB, putative, expressed
Brachypodium v1_2	Bradi1g41830.3	191	2e-89
Arabidopsis v10	AT1G53670.1	202	1e-75	\| Symbols: MSRB1, ATMSRB1 \| methionine sulfoxide reductase B 1 \| chr1:20036687-20038074 FORWARD LENGTH=202