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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_2435_PI390587928Hv_44K_v2CTTTTCAGCAGAATGTTAGTGCTTTGTAACTTATTGAAGTTCTCATATTCAACGTGCACT2258GeneList: red
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.2141.5361.2760.7910.2990.297
Raw 1481.9532933.6672128.6832058.526274.471296.755



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_69391.220582e-2435 - 9410060 / 60minus ABC07198 ABC49697
MLOCMLOC_69391.124892e-2443 - 10210060 / 60minus ABC07198 ABC49697
JLOC1JLOC1_45973.221578e-252007 - 206610060 / 60plus
JLOC1JLOC1_45973.122808e-252130 - 218910060 / 60plus
Harvest21ABC0719823363e-252259 - 231810060 / 60plusABC07198
Harvest35U35_203223763e-252259 - 231810060 / 60plus



Contig Sequence (2376 bp)

>U35_2032 2376 Hv_44K_v2
GATCGACCAGCCTCTGTAAGTGATGCTCTGACAATAACANGAAAAAGATGAAGCTTTTGC
TATTGTGCAACATGTGGGTTCTCAAATTGAATTTATTGTCAAAGTTACAAGTGATTTAAC
CAATGAAATTATTAGGGAGAAAGTTGATATAGATCAGCATAGAGGCAGTGTAGAGAAGGT
CTTCTTGAATAATTATGTCCGCACTGATAAATCTCATGGTTTTCGGGCTCTGGTTGTAAT
GGAAGATCATTCCCTCCTGTTAATTCAACAAGGTGCGGTTGTCTGGAGCAGAGAGGATGG
ACTTGCTTCAATTGTTGATGTAATGGCTTCTGAATTGCCTGTTGAGAAGGATGGTGTCTC
AGTTGCGGATGTGGAACACAATCTCTTTGAGTGGCTTAAGGGACATGTGCTGAAACTCAA
AGGAACTCTAATGCTTGCTAGTGTTGATGAACTTGCTGCAATCCAAGCATTGAGAGTCAG
AAGCTCTGAGAAAAATAAGATGACCAGAGACCATAATGGTTTCCGCAAACTTCTTATCGT
ACTGACCAAGGCTGGCAAAGTGATAGCTCTGCATACTGGAGATGGCCGTATTATCTGGTC
AAATTTGTTGCCTTCCCTTCGTGCTTCTAAATCTGGCGAAATGCCTTCTGCCTTGAGGAT
ATACCAATGGCAGGTACCCCATCACCGCGTGATGCGTGAGAACCCGTCCATACTTGTTGT
GGGAAGATCTGGAGCCAGCTCTGTTGCTCCTGGCGTCCTCTGTATTCTTGATTCGTATTC
TGGAGAGGAACTCAACTCTCAGAGATTTGACCATTCTGTTGCCCAAATTATCCCATTGAT
ACTTAAGGATTCATCTGAACAGCGTCTTCATCTTATTGTTGATTCCAACTCCAATGCTCA
CCTATATCCAAGATCTCCGGATGCCCTTAATTCATTTATGACTGAAATGTCAAATCAGTA
TTTCTATTCCGTTGATATTCAGAAAAATGCTATCAGAGGGTATTCATTACAGAAATCATG
TGACTTCGATTCGGGTGACACATACTGCTTTAGCACAAGGTTGTTATGGTCTATCATTTT
CCCTTCCGATGCTGAAAGGATTTCTGTCTCAGAAACACGAAAGATGTATGAGGTTGTTCA
TACTCAAGCAAAGATCATAGCAGATCAAGATGTGATGTATAAGTATTTATCAAAGAGCTT
AATTTTTGTTGCTACGGTGTCTCCTAAAGCTGCTGGTGAAATTGGATCCGCGGCACCTGA
AGAAGCTTCACTCATGGCATATCTCATTGATGCTGTCAGCGGACGCATACTACACCGTAT
GACTCATCATGGTGCACAAGGCCCTGTACATTCCGTTGTCAGCGAGAACTGGGTTGTCTA
TCATTATTTCAACCTCCGAGCTCACAGATTTGAAATTGCAGTGATTGAGATATATGATCA
ATCTAGGGCGGACAATAAAGATGTACTGAAGCTCATACTTGGGAAGCACAATTTGTCTGC
ACCCATGACTTCTTATTCCCGACCAGAGGTTATGGTGAAATCCCAGTCATACTTTTTTAC
TCATTCGGTGAAGGCAATGGCAGTTACGCAAACAGCCAAGGGTATCACTTCCAAGCAGCT
TCTCATTGGCACGATTGGTGACCAGGTTTTGGCACTTGACAAGCGCTTTCTTGACCCACG
CCGTTCAGTGAATCCTACACAGCAAGAGAAAGAAGAGGGTATTATACCATTAACAGATTA
TTTGCCTATCATTCCACAGTCCTATGTGACACACTCTCTTCAAGTGGAAGCCCTGCGAGG
AATTGTTTCTATTCCTGCAAAGTTGGAGTCCACTACTCTTGTTTTCACATATGGCGTTGA
TCTCTTCTACACTCGGCTTGCACCGTCAAGAACCTATGATTCACTCACGGATGAATTCAG
TTATGCCCTTCTTCTAATTACTATTGTCGCATTGGTTGCTGCTCTTTTCGTTACTTGGAT
TTGGTCTGAGAAAAAGGAATTAAGAGACAAGTGGAGGTAATTGAGGCCTCTAATGTTGTG
ATGCAAATGAAATTTTGGGCCCTAGTCGACATCGTTATCTTTCTCTTGTTTAGTGCTAGG
GTTCTATTATTTATGTAACATTTCAAAGTGAAATTTGATTCTTGGGATGACACTGCATGA
GGTACCTGTGCAGTTAGAAATCCTGGACATGACATCAAAGAACTGGCAGATCACTCGTGG
CATCCTTATACGTTATGAAATGTACCTCAGCGACCAAACTTTTCAGCAGAATGTTAGTGC
TTTGTAACTTATTGAAGTTCTCATATTCAACGTGCACTTTTTTCTGAGTAGAAAAAAAAA
AAAAAACGTTCGATCTTGACAAAAAAAAAAAAAAAG



Homology of Contig U35_2032 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os05g14170.19900.0protein|expressed protein
Brachypodium v1_2Bradi2g31830.19900.0
Arabidopsis v10AT5G11560.19820.0catalytics | chr5:3709734-3713994 REVERSE LENGTH=982