barSeed - Barley Seed Development Database

Probe CUST_24356_PI390587928

Source Contig U35_17896

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24356_PI390587928	Hv_44K_v2	CCATGGTGCTTAATAAAAAGCTACTACAGACAGATCGTGTGTTAGTCTCTACCTAAAAAA	1478	GeneList: floralwhite MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.152	0.446	2.280	2.662	1.183	0.908
Raw	25.510	122.332	526.000	898.798	153.465	125.897

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_32566.1	877	4e-23	785 - 845	98	60 / 61	plus
Harvest35	U35_17896	1549	3e-25	1479 - 1538	100	60 / 60	plus

Contig Sequence (1549 bp)

>U35_17896 1549 Hv_44K_v2
AACCGATTTCTCCTCCCTCCTCTCCATCCTTAACCAGGAAGATATCATCGGCGTCGGCAT
CGCGTAGATAGATAGATAGCGCCACCGGAAAGTTGCTTTTGCTGCTGCTGCTATATATCT
CTTGCGGCCTGTGGCATCGTGGAGGAGGATCAATTGCCGCTGGCTTAAGGAAGGAAGAGC
TGAATTGGTTATCCGGCGAGTCATCCAGGGAGCTAGGCCAAGGATATATACGTACATGGA
GGCGCCGGCGGCCAGAGGAGGAGGAGCGGTGGCGTCCGTGGTGGTGGTGGTGGTGGTGAT
GGCGATGGCGGCGGCGACGGCGCGGGCGCAGCTGCAGGTCGGGTACTACGACACGCTGTG
CCCGGCGGCGGAGATCATCGTGCAGCAGGAGGTCAGCAAGGGGGTGTCCGGCAGCCCCGG
CACCGCCGCCGGCCTCCTCCGGCTCCACTTCCACGACTGCTTCGTCAGGGGTTGCGACGG
GTCGGTGCTGGTGGACTCGACGGCGGGGAACCAGGCGGAGAAGGACGCGCCGCCCAACTC
GAGCCTGCGGGGGTTCGAGGTGATCGACGCGGCCAAGACGCGGCTGGAGCAGGCCTGCTA
CGGCGTCGTCTCCTGCGCCGACGTGCTCGCCTTCGCCGCCAGAGACGCCCTCGCCCTGGT
TGGCGGCAACTCGTACCAGGTGCCGGCGGGCCGACGAGACGGCAACGTCTCGGTGGCCGG
GGAGACCAACGGGAACCTGCCGCCGCCGACCGCCAACGTGAACCAGCTCAACCAGATCTT
CGGCTCCAAAGGCCTCACCCAGGCCCAGATGGTCGCGCTCTCAGGGGCGCACACGGTGGG
GATGGCGCAGTGCAGCTCCTTCAGCAGCCGGCTCTACTCGTACGGGACCAGCGGCGGGAA
GGACCCCAGCATGGACCCGACCTACCTGGCCACGCTCAGCACGCAGTGCCCGCAGTCCGG
AGCCAGCCAGCCCGTCGCCATGGACCCCGTCACCCCCAACACCTTCGACACCAACTACTA
CGCCAACGTCGCCGCCAACCGCGGCCTGCTCGCCTCCGACCAGGCGCTGCTCGCCGACAA
CAGCACCGCCGCCCAGGTCCTCGGCTACACCACCAACCCCGGCACCTTCCAGACCGACTT
CGCCAACGCCATGGTCGCCATGGGCGCCATCGGCGTGCTCACCGGCAACACCGGCACCAT
CAGGACAAACTGCAGGGTCGTCGGCTGATCGATCGAGCGTGTGATTGAACTGAATTGTAC
TATGGAGTAGATAGGTATAGTGTACTGTAAACTGATTGGTCGATCTGTACTCGCTAGCTC
TTAGCTTAGCTTAGCCCCACCGTCCTCTCTCTTTTCTCCTTGATCTTGCATACTGTACTT
TCTTTCACTGCTTGTGTTCCCTTAGCCTCTGTATGTATTATCTAGTTGGAACTGTATGTA
ATGACATGATCACATGATTGGGTTGGGTACCAATGTACCCATGGTGCTTAATAAAAAGCT
ACTACAGACAGATCGTGTGTTAGTCTCTACCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_17896 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g02920.1	332	3e-169	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g77140.1	334	1e-177
Arabidopsis v10	AT1G05260.1	326	6e-93	\| Symbols: RCI3, RCI3A \| Peroxidase superfamily protein \| chr1:1529827-1531271 FORWARD LENGTH=326