- Probe CUST_24351_PI390587928
- Source Contig U35_29871
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_24351_PI390587928 | Hv_44K_v2 | AGACCGTCAAGATGGTACCATTATCACTATGTGATCACACACTGGAAATGACTATATTGC | 149 | GeneList: tan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.166 | 0.717 | 1.269 | 2.272 | 1.189 | 0.567 |
| Raw | 5.712 | 47.281 | 69.070 | 192.909 | 35.379 | 18.591 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC29406 | 216 | 3e-25 | 150 - 209 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_29871 | 216 | 3e-25 | 150 - 209 | 100 | 60 / 60 | plus |
Contig Sequence (216 bp)
>U35_29871 216 Hv_44K_v2 CGCTTTCCCGGAGTGCGCGACCAATCAGGCTGTGAGGGACTTGGTTGTGATTATTTATAT TGCAGATTAGTCCCTCGCAGAAAAGCTCTTATATCTTCTTATCTATAGCTCCGATTCCGG CGATTTTATTCCCACGTCTTCGTATCATCAGACCGTCAAGATGGTACCATTATCACTATG TGATCACACACTGGAAATGACTATATTGCCCTTGCC
Homology of Contig U35_29871 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |