barSeed - Barley Seed Development Database

Probe CUST_2434_PI390587928

Source Contig U35_2033

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2434_PI390587928	Hv_44K_v2	CAGCTGGAGTATTCCATATCATGTTTCTCAGTAATGTATCAGCTGCTTTGGGTGATCAAA	1103	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.386	1.238	1.133	1.005	0.409	0.405
Raw	1151.304	1625.188	1290.571	1780.071	256.050	277.263

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_38800.1	2339	8e-25	1565 - 1624	100	60 / 60	minus
JLOC1	JLOC1_38799.1	2200	8e-25	1180 - 1239	100	60 / 60	plus
Harvest21	ABC05182	1139	3e-25	1066 - 1125	100	60 / 60	plus	ABC05182
Harvest35	U35_2033	1177	3e-25	1104 - 1163	100	60 / 60	plus

Contig Sequence (1177 bp)

>U35_2033 1177 Hv_44K_v2
CTACAGCGAGCGCCCCTTCGGTTCTTCCGCCTCGGCCCATCCACCCACGTCGACGACGAG
CTCTCTCCCTCTCGCCCCGTCTCCTCCCCCTCGCGACGCCACCGACGCGTCGCCGGCCGC
CGGCTAGCCGCCCCAGGCAGGACGTAGCTAGTCACCCCGCCCGGCCCCGATGGCCGAGGA
GCTGGTGCTCGACACGGCGATCCGGGACTGGGTCCTCATCCCGCTCTCCGTGGTCATGGT
GCTCATCGGCGTGCTCCGCTACTTCGTCTCCAAGCTCATGCGCTCCCCGCCGTCCGCCTC
CCCCTCCCCCGACCCCAAGACCGTCAAGGAGGGGCAGGTCGTCATCAGGGCGAGGAACCT
GAGGAACGGCGCGCAGTTCATCCCGGCCAAGGCCTTCAAGGCCCGCAAGCTTTATTACAC
CAACGGGGAAGCCGGATTGCTTCATGTTCCTAAAGAGGATGCGCAGAAGGCTCAGGCCGC
TATGTTTTCAGACCCAAACATGGCCATGGACATGATGAAGAAGAATCTCTCCATGATAGT
TCCACAGACACTTACATTTGCATGGGTGAACTTCTTCTTTTCCGGTTTTGTTGCAGCCAA
AATCCCCTTTCCATTGACTCAACGATTCAGGGGAATGCTGCAAAATGGGATAGACCTGAG
TACTGTTGATGTGAGCTATGTTAGCAGCCGTTCATGGTACTTCCTCAATTTATTTGGCTT
GAGGGGTCTTTTTAGTCTCATCCTTGGTGAAGAAAATGCTACTGATGATGCCCAAAAGAT
GATGGCGATGGGCGGTGGAATGGGCTTTAATCCAGCAATGAGCTTGAGCGCAGAGAAAGA
CAGCCTCGACATCATCCAGCATGACTGGGCTTTACCAAAGATGGAGCGTAATGCCGAAGA
CGTGTTGAGGAAACTACTGAAGAATTGAGCTGAACAAGCACCACTAGGCCCTCCAAGTTT
TGAGTTTAGCTTATCAACTGATCAGACAGTTATACTTCTGTAATTGTATTATTATTTTTA
TTGTTTACGAGCGCTACTGATTACGAAGCCGTGAGCTGTCTTACAAAACGATGTACTCCA
TATCATGTTTTTCAGTAATGTATCAGCTGGAGTATTCCATATCATGTTTCTCAGTAATGT
ATCAGCTGCTTTGGGTGATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_2033 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g32220.1	252	8e-140	protein\|pob, putative, expressed
Brachypodium v1_2	Bradi4g34120.1	253	4e-151
Arabidopsis v10	AT4G12590.1	246	4e-128	Protein of unknown function DUF106, transmembrane \| chr4:7451291-7452976 REVERSE LENGTH=246