barSeed - Barley Seed Development Database

Probe CUST_24344_PI390587928

Source Contig U35_29879

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24344_PI390587928	Hv_44K_v2	ATACCTCTCCATCCCTTTCCCGCGAGGCCGAAAATTTTCAAAAATCCTCGGAAACCCTAG	64	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371401	1669	2e-24	74 - 133	100	60 / 60	plus	ABC06808
MLOC	MLOC_1349.1	571	2e-24	195 - 254	100	60 / 60	minus	None
JLOC1	JLOC1_832.1	403	8e-25	137 - 196	100	60 / 60	plus
Harvest21	ABC29422	284	3e-25	65 - 124	100	60 / 60	plus
Harvest35	U35_29879	284	3e-25	65 - 124	100	60 / 60	plus

Contig Sequence (284 bp)

>U35_29879 284 Hv_44K_v2
GCCGCAGCAAGATCTTCTCTGCGGTGCCGCGAGACGAGAGCTTCCTCCTCCGCGAAATCC
TCCAATACCTCTCCATCCCTTTCCCGCGAGGCCGAAAATTTTCAAAAATCCTCGGAAACC
CTAGCGCCCCGCCCCTCCCCTCCCCGCGTCGCCGCCGCCGCGGAGTCGGAGCTCCCCCGC
CTTTACCCGCCGCCGGCCATGGAGGCGGTGGTCGTCGACGCGGGGTCGAAGCTGCTGAAG
GCGGGCATCGCGCTGCCCGACCAGGCGCCCGGGCTGGTGATGCC

Homology of Contig U35_29879 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None