barSeed - Barley Seed Development Database

Probe CUST_24341_PI390587928

Source Contig U35_29882

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24341_PI390587928	Hv_44K_v2	GTCTGTTGAAGTGAGAAGGTTAAGAGAATCGTTATCTGCTTTTGCAGGTTTTCTTAAAAA	170	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63134.2	1004	9e-22	85 - 139	100	55 / 55	minus	ABC01243 ABC01248 ABC31827 ABC38719 ABC39145
Harvest21	ABC29426	242	3e-25	171 - 230	100	60 / 60	plus
Harvest21	ABC01258	928	2e-22	799 - 853	100	55 / 55	plus
Harvest35	U35_29882	242	3e-25	171 - 230	100	60 / 60	plus

Contig Sequence (242 bp)

>U35_29882 242 Hv_44K_v2
GCTGCATTGATCGCCACCGGGACACGGAGTTGGTAGAGATCAGCCTGTGATCTGTTGCCG
TGTCGGTAGAATAAAAGTCGTGTGCGGTCGGTGGTGGTGATGCGTCCGTGAGTTTGTGTG
TTTTGCCTAGCTTGTTGCTGAAATTTGTACCCTGTTACTTGACTTCGTATGTCTGTTGAA
GTGAGAAGGTTAAGAGAATCGTTATCTGCTTTTGCAGGTTTTCTTAAAAAAAAAAAAAAA
AA

Homology of Contig U35_29882 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None