- Probe CUST_24338_PI390587928
- Source Contig U35_29885
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_24338_PI390587928 | Hv_44K_v2 | TTCTCATTTAGAGAAGAGTGACAGTGTACCAAAACCTGCAGAAAGGCCATCCCCAGTTTC | 180 | GeneList: darkred MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.969 | 2.345 | 2.414 | 1.175 | 0.456 | 0.390 |
| Raw | 589.106 | 2260.806 | 1936.383 | 1437.369 | 203.717 | 190.080 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_37402.8 | 3678 | 2e-24 | 2405 - 2464 | 100 | 60 / 60 | plus | ABC10753 ABC29439 |
| MLOC | MLOC_37402.5 | 4451 | 2e-24 | 3178 - 3237 | 100 | 60 / 60 | plus | ABC10753 ABC29439 |
| MLOC | MLOC_37402.6 | 4626 | 2e-24 | 3271 - 3330 | 100 | 60 / 60 | plus | ABC10753 ABC29439 |
| MLOC | MLOC_37402.2 | 4372 | 2e-24 | 3182 - 3241 | 100 | 60 / 60 | plus | ABC10753 ABC29439 |
| MLOC | MLOC_37402.3 | 4463 | 2e-24 | 3272 - 3331 | 100 | 60 / 60 | plus | ABC10753 ABC29439 |
| MLOC | MLOC_37402.4 | 4362 | 2e-24 | 3172 - 3231 | 100 | 60 / 60 | plus | ABC10753 ABC29439 |
| MLOC | MLOC_37402.1 | 4073 | 2e-24 | 3275 - 3334 | 100 | 60 / 60 | plus | ABC10753 ABC29439 |
| MLOC | MLOC_37402.7 | 4706 | 2e-24 | 3269 - 3328 | 100 | 60 / 60 | plus | ABC10753 ABC29439 ABC42694 |
| JLOC1 | JLOC1_24220.2 | 4873 | 8e-25 | 3282 - 3341 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_24220.1 | 4866 | 8e-25 | 3275 - 3334 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC29439 | 318 | 3e-25 | 181 - 240 | 100 | 60 / 60 | plus | ABC29439 |
| Harvest21 | ABC10753 | 1738 | 1e-23 | 314 - 373 | 98 | 59 / 60 | plus | ABC10753 |
| Harvest35 | U35_29885 | 318 | 3e-25 | 181 - 240 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_4977 | 1738 | 1e-23 | 314 - 373 | 98 | 59 / 60 | plus |
Contig Sequence (318 bp)
>U35_29885 318 Hv_44K_v2 GCCATCCCCAGTTTCCGCTGAGTCGTCAGGAAAAGAGACACCTCGGGTTCAGAGAACCAA AGAGAGGGGGAGTATAACAGAAAGATTTACAATATTCGAAGAAGAGAAAAGCAGGGTAAA TAAAATGGAAGGAAAGGTCTCTAGAGAAAGGATATCAAAGGCAGAACCAAAGCATCAACA TTCTCATTTAGAGAAGAGTGACAGTGTACCAAAACCTGCAGAAAGGCCATCCCCAGTTTC CGCTGAGTCGTCAGGAAAAGAGACACCTCGGGTTCAGAGAACCAAAGAGAGGGGGAGTAT AACAGAAAAAAAAAAAAA
Homology of Contig U35_29885 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |