- Probe CUST_24335_PI390587928
- Source Contig U35_29889
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_24335_PI390587928 | Hv_44K_v2 | ACATTACGTTGTGCTCTCGCTATGATGATGTACTGACACTGTGTGTGTTGGGGCAAAAAA | 44 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.782 | 2.557 | 1.363 | 0.791 | 0.259 | 0.250 |
| Raw | 922.456 | 2102.635 | 939.742 | 872.192 | 97.831 | 103.666 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_76410.2 | 1640 | 9e-22 | 53 - 107 | 100 | 55 / 55 | minus | ABC20294 |
| MLOC | MLOC_76410.1 | 2654 | 9e-22 | 126 - 180 | 100 | 55 / 55 | minus | ABC20294 |
| MLOC | AK377021 | 1913 | 3e-21 | 1860 - 1913 | 100 | 54 / 54 | plus | ABC20294 |
| JLOC1 | JLOC1_50953.1 | 2508 | 5e-22 | 2325 - 2379 | 100 | 55 / 55 | plus | |
| Harvest21 | ABC20294 | 649 | 2e-22 | 565 - 619 | 100 | 55 / 55 | plus | ABC20294 |
| Harvest35 | U35_29889 | 115 | 3e-25 | 45 - 104 | 100 | 60 / 60 | plus |
Contig Sequence (115 bp)
>U35_29889 115 Hv_44K_v2 CGGGGTATGAGATGCAAAAGCACGGAAGTTTATGTGCGTGTGTGACATTACGTTGTGCTC TCGCTATGATGATGTACTGACACTGTGTGTGTTGGGGCAAAAAAAAAAAAAAAAA
Homology of Contig U35_29889 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |