barSeed - Barley Seed Development Database

Probe CUST_24330_PI390587928

Source Contig U35_29895

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24330_PI390587928	Hv_44K_v2	AGGAGTCGCTCGACAACATCCTCCTCGACCTCTACAAGAGGTGCGGGCGGCTGGACGACC	179	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373959	2066	2e-24	491 - 550	100	60 / 60	plus	ABC18424
MLOC	MLOC_71493.2	753	2e-24	176 - 235	100	60 / 60	minus	ABC18424
MLOC	MLOC_71493.1	2228	2e-24	1523 - 1582	100	60 / 60	minus	ABC18424
JLOC1	JLOC1_47523.1	2089	8e-25	505 - 564	100	60 / 60	plus
Harvest21	ABC29463	239	3e-25	180 - 239	100	60 / 60	plus
Harvest35	U35_29895	239	3e-25	180 - 239	100	60 / 60	plus

Contig Sequence (239 bp)

>U35_29895 239 Hv_44K_v2
GCAGCTTGTGGACAAGGACCCGGAGAAGGCGATAGCGCTGTTCTGGGGCGCGATCAACGC
CGGCGACAGGGTGGACAGCGCGCTCAAGGACATGGCCATCGTGATGAAGCAGCAGAACCG
CGCCGAGGAGGCCATCGAGGCCATCAAGTCGCTCCGCAGCCGCTGCTCCGACCAGGCGCA
GGAGTCGCTCGACAACATCCTCCTCGACCTCTACAAGAGGTGCGGGCGGCTGGACGACC

Homology of Contig U35_29895 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None