barSeed - Barley Seed Development Database

Probe CUST_24327_PI390587928

Source Contig U35_29898

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24327_PI390587928	Hv_44K_v2	AGCTACCTCTGCGACAAGCCCACACTCGCGTCCGCCGCCGCCGCCGAGGCCGCTGCTTCA	209	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371135	2751	2e-24	260 - 319	100	60 / 60	plus	None
Harvest21	ABC29470	269	3e-25	210 - 269	100	60 / 60	plus
Harvest35	U35_29898	269	3e-25	210 - 269	100	60 / 60	plus

Contig Sequence (269 bp)

>U35_29898 269 Hv_44K_v2
TAGTTGCGCTCAGTTTCCTCGCTCCCACCCCCCGCCGTCCGCCCCATTTCCGCGTCTCGG
CGTGCGGAAGTCAACCCCAACACACCCCGCGCCCCGGAATCGCCGCGAATCCGGCGGCCA
TGTACGGCGACTCCGACGGATCCAAGGACCCCGGCGCCGCGCCGCCGCCCTCCGACCAGC
CCTTCCCCAACCGCGAGCTCACCCTCAGCAGCTACCTCTGCGACAAGCCCACACTCGCGT
CCGCCGCCGCCGCCGAGGCCGCTGCTTCA

Homology of Contig U35_29898 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None