barSeed - Barley Seed Development Database

Probe CUST_2431_PI390587928

Source Contig U35_2036

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2431_PI390587928	Hv_44K_v2	AAGCCATGCTCTCTGTTTTTCCTCTATGAAAAATCTGTGTTCTCCTTTATCGAAGAATGA	758	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.385	3.476	1.182	0.780	0.146	0.260
Raw	270.585	453.255	130.654	148.690	8.483	17.934

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64050.1	1979	2e-24	1063 - 1122	100	60 / 60	minus	ABC05570
MLOC	AK371230	773	6e-24	715 - 773	100	59 / 59	plus	ABC05570
JLOC1	JLOC1_42011.1	1361	8e-25	445 - 504	100	60 / 60	minus
Harvest21	ABC05570	831	3e-25	738 - 797	100	60 / 60	plus	ABC05570
Harvest21	ABC05569	798	3e-25	698 - 757	100	60 / 60	plus
Harvest35	U35_2037	721	3e-25	402 - 461	100	60 / 60	plus
Harvest35	U35_2036	852	3e-25	759 - 818	100	60 / 60	plus

Contig Sequence (852 bp)

>U35_2036 852 Hv_44K_v2
AGCTCAATTATAACACCACTGCCAGCAGCCCTCATCACCCAGCTGCCCCCGGCACCCTTT
CCTCTCCTTCACACTCTACACCCGCAACCACAAGCACACCACCAACAAGCTCGCCGGTCG
CCATGGAGAAGTGCAGATCGGTGCCGCACGAGCACGCGGCGGCGTACTACGGGTGCGGCG
GCGGGTACGACTACGAGGACGTGGGCCGTGGCGGCGGTGGCACGGCGGTCAAGTCGTACA
GCTTCAACGGCCCCAGCGCCGGCGACGACCCGGAGGCGAAGCGGCGGCGGCGCGTGGCGT
CGTACAACGTGTTCGCCTCGCAGGCCCGGCTCAAGTCCTCCGTCCGTGGCAGCTTCAAGT
GGCTCAAGTCCAAGCTCTCCGACGTCCGCTACGGTGGCCTCTGAAACTTTTTCCTCCCAG
CCTCCAACGAACCCTCCATGAACCGAACCTCTACTACATATACGTGCATATGCATGAAGG
AGTGTGTATGTGTGTGTGCTGCTGCTGCTGCTGCTGCTGCTGCTATACGTGCAGGCATGG
CCCCCAAGTTGCTGCATATAGGTGTGTACTGTTTAATCACATGCCGTATTTGTGCATGTA
TGAACTGCTGCTGCGTGTGTGTGATGCTAAGTTGCTGCATGGTTAACTGCTGGATCCATC
CATGGATCGGTCTATGTGTTTTTGGTTGCCTTTTTTGAGACGCTAAGAACGGTGGTTGTA
CTCTTATATCCTCCTTAAGCTGCAGATCAAGATGTATCAAGCCATGCTCTCTGTTTTTCC
TCTATGAAAAATCTGTGTTCTCCTTTATCGAAGAATGAAAAATCTGTTCTCTCTTAAAAA
AAAAAAAAAAAA

Homology of Contig U35_2036 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None