barSeed - Barley Seed Development Database

Probe CUST_24314_PI390587928

Source Contig U35_40215

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24314_PI390587928	Hv_44K_v2	CTCGCCGTGTCCTCTAGGAGAAATTCAATGGATATAAGTTGATTGTTAATTTAATTTAGG	4	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.291	2.517	1.199	0.828	0.425	0.622
Raw	189.275	596.142	233.464	265.559	45.030	75.303

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_40215	474	3e-25	5 - 64	100	60 / 60	minus

Contig Sequence (474 bp)

>U35_40215 474 Hv_44K_v2
TTTTCCTAAATTAAATTAACAATCAACTTATATCCATTGAATTTCTCCTAGAGGACACGG
CGAGGGGTAAATCCTCGGCAGTAAAAAAAAAAAACTATGAACAGAAACTTGAAGGAAGAA
AGAAAGAAAGAAAGAATCTAAGTTTCCATTTTAGGACTATTTTCCGTTCGCCGGAACAAG
CTATGATGCCTTTCGCATTGCTCGGAGCACTCACGGCACCGGATGGACGGACGATCTGTC
AGCAAAGGATGGCCTCCACGCTGCCGGTCCTCACGCAACGGCACACCGGGCACGCCAGGG
CCACGTCCATGTCGCCGGCGGCGAAGCAGTCGCGGCAGAGGCTCAGGTGTCTGCACGGGA
GGAGCACCACCGTGGCCGCCCCGAGGTGGCAGCTGTGGCACGCGCGCTCAGGCCCGGTGC
GGCGAGGGTCTACGTACGCCGACGAGCACGATTCGGCGGGGCCGGCGTCGCCTC

Homology of Contig U35_40215 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None