barSeed - Barley Seed Development Database

Probe CUST_2428_PI390587928

Source Contig U35_2039

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2428_PI390587928	Hv_44K_v2	ATTTCTCATTTGCTGAGTGCTGATGTATTGATATGTGCTTAAAGGGAAACTCTTGACATC	1607	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.897	1.483	1.171	0.852	0.288	0.311
Raw	1167.091	1440.673	979.591	1125.682	133.317	157.638

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55695.1	1673	9e-22	1619 - 1673	100	55 / 55	plus	ABC05061 ABC40912
JLOC1	JLOC1_35962.1	2026	8e-25	1575 - 1634	100	60 / 60	plus
Harvest21	ABC05062	407	3e-25	348 - 407	100	60 / 60	plus
Harvest35	U35_2039	1667	3e-25	1608 - 1667	100	60 / 60	plus

Contig Sequence (1667 bp)

>U35_2039 1667 Hv_44K_v2
CAGCACGCCCGCGCCCACGCCCCCTCCCTCCTCGCGCCGCCGCCGCCGCCGCCGCCAAAA
CCCCAGGCCAGGGCGCTTGCTTCCCGCTCGGCGCGGCGAGGGGAGGTCGTCGTCGTCGCG
CGCGCGATCCGGGAGGGCGAGAGGGGAGGCGGGCGACCGGACGAGGGAGATGGCTTCGGA
GGACGTGGTGGGGAAGAGCAGGGGCGACACGGCCGTCAACACCATCGTCAACCTGGCCGA
GGAGGCCAAGCTCGCGCGCGAGGGCGTCAAGGGCCCCGGCCACCAGGTCCTCACCATCTG
CAAGTCCCTCTTCGCCGGAGGCGTAGCCGGTGGCCTATCGAGGACTGCTGTTGCTCCGCT
TGAGCGATTGAAGATCCTGCTTCAGGTTCAAAATCCTCACAGTATCAAGTACAATGGCAC
CGTTCAAGGGCTTAAGTATATATGGAGAACCGAAGGCCTTCGTGGACTGTTTAAAGGCAA
TGGAACCAACTGTGCAAGGATTGTCCCAAATTCTGCTGTGAAATTCTTCAGCTATGAGCA
AGCATCAAGGGGTATTTTGTATCTTTACCGGCAACAGACTGGGGATGAGAATGCTCAGCT
TAGTCCAATCTTGCGCCTTGGAGCTGGAGCCACAGCTGGTATCATAGCCATGTCTGCTAC
TTATCCCATGGATATGGTTAGGGGTAGGATTACTGTTCAGACAGAGAAGTCTCCCTACCA
GTACCGTGGTATGTTTCATGCATTGGGCACAGTGTACCGTGAAGAAGGCTTCCGTGCTTT
ATACAGAGGCTGGCTTCCATCAGTGATTGGAGTTGTTCCTTATGTTGGCCTTAACTTTGC
TGTGTACGAGTCTCTGAAGGACTGGCTCCTCCAGTCAAATGCATTCGATCTTGCAAAGGA
CAATGAGCTGCACGTAGTAACAAGGCTTGGATGCGGAGCTGTGGCTGGAACCATAGGGCA
GACTGTGGCATACCCTCTTGATGTTGTCAGGAGAAGGATGCAGATGGTCGGCTGGAGTCA
TGCTGCTTCTATTGTTACTGGAGAAGGCAAAGAGGCACTCCAGTACAATGGTATGGTTGA
TGCATTCAGGAAAACTGTTCGCCACGAAGGTTTTGGTGCTCTGTACAAGGGTCTTGTTCC
CAACTCAGTGAAGGTGGTGCCTTCTATCGCCATCGCGTTCGTCACGTACGAGGCCGTGAA
GGATGTTCTAGGAGTAGAGATGAGGATAGACTGAAGAATCGGACCTAGCGCTGTCCGTGT
CATCAACTTCTATTTTTGTAGGTGTTTGAGTTCCCTTTTTTTGTTAGGCAGGGCGAGTAG
AAGGACAATAGGACCGAGGCTCCATTCAGCATAAGGCCCTCTCAGCCCATGTCGATATAT
CCTACTACTGGTTCCGGAACCCTAATTGCTGCCGCACTCTCGCTTCGGAAAGTAATAAGT
TGGCTGTAAAGCATTAAAGCATTTGCCTGACTCATAAAGTCTTATTCAGTGAGGAACCTT
GTATTGAGATTGAAACATAAGCTGCATGCTGTGTGCTGCTGCTAATAGTTGATTTTCACC
ATTCTCTTCAAAAAAAAAAAAAAAAATGCATCTTTGTTGTGACTGGCATTTCTCATTTGC
TGAGTGCTGATGTATTGATATGTGCTTAAAGGGAAACTCTTGACATC

Homology of Contig U35_2039 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g50840.1	356	protein\|mitochondrial carrier protein, putative, expressed
Brachypodium v1_2	Bradi2g14840.1	355
Arabidopsis v10	AT4G01100.2	366	\| Symbols: ADNT1 \| adenine nucleotide transporter 1 \| chr4:477411-479590 FORWARD LENGTH=366