barSeed - Barley Seed Development Database

Probe CUST_24282_PI390587928

Source Contig U35_40256

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24282_PI390587928	Hv_44K_v2	AAATGTTTCCACTTCTCGTCACCTAAGCAGTGTATTGGGTGTTCTTCCTTTCTTCAGGTT	381	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56888.7	849	2e-24	782 - 841	100	60 / 60	minus	ABC22098
Harvest21	ABC36611	475	3e-25	382 - 441	100	60 / 60	plus
Harvest35	U35_40256	475	3e-25	382 - 441	100	60 / 60	plus

Contig Sequence (475 bp)

>U35_40256 475 Hv_44K_v2
GGGAGGCGCCGCGCTGCGTCGGCTGCGGCCGGCGCGTGAGGACGCTCTTCGTGCAGTACT
CCCCGGGCAACATCCGTTTGATGAAATGCGATGTCTGCAAGGCTGTCGCTGATCCCTACA
TCGAGTGTGAATTCATGATTATCTTGATCGATCTGATTCTACACAAGACCAGGGCATATC
CGTACTTACTGTTCAATAAGCTGCACATTGGTTCATGTGGGGGGGAGGGAATACTGTGCC
AGTTCATTGTGATGCATATCGTTCTTGACGCTTAATATCAGTTTCAAAAAACAACAAAGC
TGATGGAGATTCTTCCAGGAGCACATTGTCCACAATTTGCAATTGCAGCGAGGTGATTAA
AGTTGACTTCATTCAGATAACAAATGTTTCCACTTCTCGTCACCTAAGCAGTGTATTGGG
TGTTCTTCCTTTCTTCAGGTTCTGGGTGATGCATTGTTAGGAAACATCATATTTA

Homology of Contig U35_40256 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None