barSeed - Barley Seed Development Database

Probe CUST_24270_PI390587928

Source Contig U35_40273

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24270_PI390587928	Hv_44K_v2	AACATTAATTTTCTTAATTGCATCGTTTCAGGCTTCCGCTACGCGTGCGCTGACAAAGGG	288	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.659	0.869	1.857	2.127	0.917	0.854
Raw	46.802	100.111	180.447	332.923	50.933	51.045

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_40273	465	3e-25	289 - 348	100	60 / 60	plus

Contig Sequence (465 bp)

>U35_40273 465 Hv_44K_v2
ATCATTTTTGTCTTCTGAATTTCTGATGATGGTGTTTGCGGCGTCCAGATCGCCTTCATC
CCGTTCATCGTCGCTGGCGACCCCGACCTGGCGACCACGGCCAAGGCGCTCAAGGTTCTC
GACGCGTGTGGTTCCGATGTGATCGAATTGGGCGTGCCCTACTCCGATCCGTTGGCCGAT
GGCCCTGTTATTCAGGTACGCCACAATGTTAACATATACATGTCCTCTAGTATTGTGGTA
CCATTGTATTCTGTCTGCAGCGTTCATGTTCTTCAGCTTATGCGTTTTAACATTAATTTT
CTTAATTGCATCGTTTCAGGCTTCCGCTACGCGTGCGCTGACAAAGGGGCACCACGTTTG
AGGATGTCATCTCCATGGTGAAAGAGGTGGTGCCCGATCTGTCCTGCCCTCTGGCGCTTT
TCACGTATTACAACCCGATTCTGAAGCGCGGTGTCGCCAACTTCA

Homology of Contig U35_40273 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None