barSeed - Barley Seed Development Database

Probe CUST_2425_PI390587928

Source Contig U35_2042

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2425_PI390587928	Hv_44K_v2	TTTGTCAGATTTTGTGTGGCAACATTGCTGTGAATAAAGCTCATACATGAGAAAGTCTGT	1351	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.265	2.904	0.949	0.978	0.518	0.731
Raw	290.864	408.505	119.229	189.055	35.746	55.123

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6299.3	5342	2e-24	4120 - 4179	100	60 / 60	plus	ABC09337 ABC09338 ABC09354 ABC40185
MLOC	MLOC_6299.1	4221	2e-24	1869 - 1928	100	60 / 60	plus	ABC09337 ABC09338 ABC09354 ABC40185
JLOC1	JLOC1_4100.1	3676	8e-25	1145 - 1204	100	60 / 60	minus
JLOC1	JLOC1_4099.1	2827	8e-25	1869 - 1928	100	60 / 60	plus
Harvest21	ABC09337	1434	3e-25	1352 - 1411	100	60 / 60	plus	ABC09337
Harvest35	U35_2042	1411	3e-25	1352 - 1411	100	60 / 60	plus

Contig Sequence (1411 bp)

>U35_2042 1411 Hv_44K_v2
ATGTGGCGCGAGATGGAAAATATACTAGCAGTCTCCCCACGATTAATAGGAGATTTGCAG
CAACCCTTGGTGAGCTTGTTGGTGGGCGAGTTGGCCTTGCATATAGTTCGGTGGGAGTAC
TCAAAGTTTCAGTAACCATTGCTGTTAGATATGCTTTACTGCGTCAACAGTTTGGTCCAC
CTAAGGAGCCTGAAATCAGTGTGCTGGATTACCAGTCCCACCAGCACAAACTAATGCCTA
TGTTAGCATCAGCGTATGCATTTCATTTTGCCAGATCGTATTTGGTAGATATGTACTCGG
AGATGAAGAAAACCAATGACGAGGATCTTAGCGCCGATGTCCATGTACTTTCGTCTGGGT
TGAAATCCTATATAACTTCATACACAGCAAAAGCCATAAGCATATGCCGAGAATCATGTG
GTGGCCATGGATATGCCGCTGTAAATCGCTTTGGTGGTCTGCGGAATGACCATGATATAT
TTCAAACATTCGAAGGAGACAACACAGTTCTGCTGCAGCAGGTTGCTGGAGATCTCCTGA
AGCAATATCAGCAAAAATTCAAGGGAGGGACACTCTCGGTCACCTGGAACTACTTGAGAG
ACTCCATGAGCACCTACTTGTCTCAGCCTAATCCCGTCACTGCTCGGTGGGAAGGGGAAG
ATCATCTCAGGGATCCTAAATTTCAGCTGGACGCATTCAGGTACCGAACATCAAAACTAC
TGCATAGTGTTGCCGCTCGACTCCAGAAGCACATGAAGACACTCGGAGGTTTCGGTGCGT
GGAACAGATGTCTAAACCATCTGCTCACGCTCGCGGAGTCGCACATTGAGTCTGTCATCC
TCGCAAGGTTTATAGAAGCAGTGAAGAGTTGCCCCGATGAAAAAACACGCGAAGTACTGA
AGCTGGTGTGTGACCTTTATGCACTTGAAAGGATCTGGAAAGACATCGGGACATATCGGA
ATGTAGACTATGTCGCGCCAAACAAAGCCAAGGCTATCCATAAACTGGTAGACTACCTCA
GTTACCAGGTGAGGCTTGTGGCTCGAGAACTTGTTGACGCCTTCGATATCCCAGATCAAA
TCATCCGCGCACCAATCGGCATGCAATCGGAGGCTTACGCTCACTATACGCAGGGCGTCG
GTTTCTACAACCAACCAACATAAACCTACGATTCTACTGGAAGCTCATACCGTTAGGCAA
GAAGCTATATATAGACAAACTTCTATCATATACCCACCAACATAGTAAGGCTAAATAAGT
GTATAATAAGATCTATCAAAGAAAAAGAAAGTGTATAATAAGATAAGTAATAGACATGAG
ATGTGTATAAGTGATAGTATTATGTATAAATTTTGTCAGATTTTGTGTGGCAACATTGCT
GTGAATAAAGCTCATACATGAGAAAGTCTGT

Homology of Contig U35_2042 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os11g39220.2	510	protein\|acyl-coenzyme A oxidase, putative, expressed
Brachypodium v1_2	Bradi4g14090.1	693
Arabidopsis v10	AT5G65110.1	692	\| Symbols: ACX2, ATACX2 \| acyl-CoA oxidase 2 \| chr5:26009821-26012482 REVERSE LENGTH=692