barSeed - Barley Seed Development Database

Probe CUST_24255_PI390587928

Source Contig U35_40293

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24255_PI390587928	Hv_44K_v2	TTCTTCCTTGTCGAGAGTTAGCTCATTTCCCTTTGCATTTTTCTCGTCGTCGTAGCCGTA	84	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.664	3.102	1.060	0.801	0.192	0.395
Raw	161.261	181.730	52.444	67.605	4.160	11.621

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364144	2830	2e-24	2702 - 2761	100	60 / 60	plus	ABC24100
MLOC	MLOC_67174.2	1422	2e-24	37 - 96	100	60 / 60	minus	ABC24100
MLOC	MLOC_67174.1	1692	2e-24	306 - 365	100	60 / 60	minus	ABC24100
JLOC1	JLOC1_44318.1	1847	8e-25	1327 - 1386	100	60 / 60	plus
Harvest21	ABC24100	743	3e-25	174 - 233	100	60 / 60	minus	ABC24100
Harvest35	U35_40293	650	3e-25	85 - 144	100	60 / 60	minus
Harvest35	U35_7569	1317	3e-25	1085 - 1144	100	60 / 60	plus

Contig Sequence (650 bp)

>U35_40293 650 Hv_44K_v2
AAGGTACTGCTGCTAGGAGTGGTATCCAGAGTGGTACTGCTGCTGCTGCTGCTACATTGA
TTTGTTTGCAGCTCCTGCCTACGGTACGGCTACGACGACGAGAAAAATGCAAAGGGAAAT
GAGCTAACTCTCGACAAGGAAGAAACCACAGCTTGTACTTGGGCTGTAGGCGTGGGGTGG
TACTTGGTCCGGCTTATTGCTCGCTAATGGAGGTCCAGGGGTCGCCGGCGACCTAGGTTA
TTCGGCTCAAGATCGATGGATGTTGCTGCTTGCCTCCCTTCCTTCCTAGCCCCCAATGTT
GTCGCTCCCCGCGTCCGCCAGGATCATCAGCCTCCGGGCCGACTTCACGAACGCGCTGAA
AGGCTCATCGCCGATGTGCTTCACCTCGCCGGCGGCGCTGCGGTAGAGCACGTGGTTCCT
CACTTCAGCGCAGTCCATGCCGAACATGTCGGACATGCGGCCGTACAGCTCCTCGAACGA
GCCCAGCGCCGAGAGGTCCAGGTTGCGCCCCACGGCGTCCGACTCCACGAACACCTTGCA
CTGCCCGGGCTCCAGCCCCAGCTCCGGCGCCGCCTGGCTGCCGCTGTCCCCGAACCACTG
CAGCCTCCATGAGGACGTGTTGTTGTTGTTGTTGTTGCTTGGGCTGCCCT

Homology of Contig U35_40293 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None