barSeed - Barley Seed Development Database

Probe CUST_24252_PI390587928

Source Contig U35_40297

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24252_PI390587928	Hv_44K_v2	TCTAGCTATTGGAGATGGTGCAAATGATGTGTCCATGATCCAAATGGGCGATGTTGGCAT	451	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12897.1	4295	7e-23	3024 - 3083	98	59 / 60	plus	None
JLOC1	JLOC1_8680.1	4095	4e-23	2903 - 2962	98	59 / 60	plus
Harvest35	U35_40297	518	3e-25	452 - 511	100	60 / 60	plus

Contig Sequence (518 bp)

>U35_40297 518 Hv_44K_v2
GCCTGCTGGGAGCCTCCGGTGTCGAAGACAAGCTGCAAGATGGGGTTCCTGAAGCAATTG
AGAAACTAAGGGAAGCAGGCATTAAGGTTTGGGTGCTGACAGGTGACAAACAAGAAACTG
CCATCTCCATTGGCTATTCCTGCAAGCTTCTGACAAGGGACATGACACAGATTGTAATCA
ATAGTAATTCAAGAGAGTCATGCAGAAAAAGTCTGGATGATGCCATCTCCATGGTTAACA
AACTTCGGTCGCTATCTTCAGACTCTCAATCTAGAGTTCCCCTCGCTTTGATCATTGACG
GTAACAGTCTCGTCTACATTTTTGACACAGACCGGGAGGAGAAGCTTTTTGAAGTCGCGA
TAGCGTGCGATGTTGTTCTATGTTGTCGAGTGGCTCCTCTACAGAAGGCTGGGATTGTTG
ATTTAATAAAGAAGCGAACAAGTGACATGACTCTAGCTATTGGAGATGGTGCAAATGATG
TGTCCATGATCCAAATGGGCGATGTTGGCATTGGCATC

Homology of Contig U35_40297 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g20949.1	1125	5e-101	protein\|phospholipid-transporting ATPase, putative, expressed
Brachypodium v1_2	Bradi1g63650.1	1125	4e-100
Arabidopsis v10	AT5G04930.1	1158	2e-68	\| Symbols: ALA1 \| aminophospholipid ATPase 1 \| chr5:1445509-1449568 FORWARD LENGTH=1158