barSeed - Barley Seed Development Database

Probe CUST_2424_PI390587928

Source Contig U35_2043

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2424_PI390587928	Hv_44K_v2	CTACGCTCAGTACACGCAGCATATCGGCTTCTAGACAATATATAAACAACCTTCTACTAT	515	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56833.2	2402	7e-23	152 - 212	98	60 / 61	minus	ABC09337 ABC09338
MLOC	MLOC_56833.1	2426	7e-23	183 - 243	98	60 / 61	minus	ABC09337 ABC09338
JLOC1	JLOC1_36795.1	2481	4e-23	2191 - 2251	98	60 / 61	plus
Harvest21	ABC09338	577	3e-25	516 - 575	100	60 / 60	plus	ABC09338
Harvest35	U35_2043	578	3e-25	516 - 575	100	60 / 60	plus

Contig Sequence (578 bp)

>U35_2043 578 Hv_44K_v2
GACTCCATGAGCACCTACTTGTCTCAGCCTAACCCTGTTACTGCTCGGTGGGAAGGGGAA
GATCATCTAAGGGATCCTAAGTTTCAGCTGGATGCATTCAGGTACCGAACATCTAGACTA
TTGCATAGTGTTGCTGCTCGACTCCAGAAGCACATGAAGACACTTGGAGGTTTTGGTGCG
TGGAACAGATGTTTAAACCATCTGCTCACGCTGGCAGAGTCACACATTGAGTCTGTCATC
CTCGCAAGGTTTATAGAAGCAGTGAAGAGTTGCCCTGATGAAAAAACACGTGAAGTACTG
AAGCTGGTGTGCGACCTTTATGCGCTCGATAGGATCTGGAAAGACATCGGGACATATCGG
AATGTAGACTATGTCGCGCCAAACAAAGCCAAGGCTATCCATAAACTGGTAGACTACCTC
AGTTACCAAGTGAGGCTTGTTGCTCGAGAACTCGTCGACGCCTTTGATCTTCCAGACGAA
GTCATCCGTGCGCCAATCGGCTTGCAATCGGAGGCCTACGCTCAGTACACGCAGCATATC
GGCTTCTAGACAATATATAAACAACCTTCTACTATCAT

Homology of Contig U35_2043 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g39220.2	510	2e-119	protein\|acyl-coenzyme A oxidase, putative, expressed
Brachypodium v1_2	Bradi4g14090.1	693	2e-120
Arabidopsis v10	AT5G65110.1	692	7e-106	\| Symbols: ACX2, ATACX2 \| acyl-CoA oxidase 2 \| chr5:26009821-26012482 REVERSE LENGTH=692