barSeed - Barley Seed Development Database

Probe CUST_24246_PI390587928

Source Contig U35_17903

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24246_PI390587928	Hv_44K_v2	TTAAACAATTACCAGAACATGCTTAGAGGCTCAAGCCCGAATCAAAGTTTGCTTCAGCAG	307	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362613	3356	2e-24	2072 - 2131	100	60 / 60	plus	ABC07972 ABC08350 ABC19912
MLOC	MLOC_75369.1	2856	2e-24	2760 - 2819	100	60 / 60	plus	ABC08350
JLOC1	JLOC1_50276.2	1890	8e-25	1794 - 1853	100	60 / 60	plus
JLOC1	JLOC1_50276.1	1882	8e-25	1786 - 1845	100	60 / 60	plus
Harvest21	ABC07970	810	3e-25	308 - 367	100	60 / 60	plus
Harvest35	U35_17903	811	3e-25	308 - 367	100	60 / 60	plus

Contig Sequence (811 bp)

>U35_17903 811 Hv_44K_v2
GAAACAAACTGCTGGGCCAAAGCTCACGGTGCAGAATTTGCATGACTCAAAGGCGGTCAA
AACAGAAATGAGCCCCCATGTGAATAACGAAGTTCCAGGTGTTGGAGCAATTAGTAATAA
TCCGCAGAATCCTGCAGCACAAAGCAATTACCAACATATGCTGAGAAGCTCAAGTGCAAA
TCAGGGTTTGCTTCAGCAGGAGGCATCACAGAACGCTGCGGCAATGAACAGTTACCAGAA
TATGTTTAGAAGCTCAAGCACAAATCAGGGTTTGCTCCAGCAGGAGGCATCTCAGAATGC
TGCTGCGTTAAACAATTACCAGAACATGCTTAGAGGCTCAAGCCCGAATCAAAGTTTGCT
TCAGCAGGAGGCATCGAGCATCTTCAAAGGTCCTACAGCAGTGCACAGTGGCATTCAGCT
GGAAGCATCTAGGTCATTCCGTGCGGCTCAGCTTGGTCAATTCCAGCATCCCATGTCGTT
CCAGCAAGGTATGCCCCAGCACCAGCATACCAATTTCCAAGGCCTGGGCGCTAGTCCACA
ATTCCAGCAGCATGTGATCAACCAGCTGCTGCAAGAAGCCAAGAATACCAATAGCCGTGC
TCTTGCTCATCAGCAACAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAACAACA
CCGTCAGCAGCAGCAGCAGCATCAGCAGCAACATCAACAGCAGCAGCAGTCTCCTAGCAC
TCCCAATGCAAATGGTGGTCTTGCATCTGGAGCCGCGGTCGCCAACACCGCTGCTAGTGG
AGAGCAGGCACAGCACATGAATAACGGCGCA

Homology of Contig U35_17903 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g49497.1	815	2e-102
Arabidopsis v10	None