barSeed - Barley Seed Development Database

Probe CUST_24245_PI390587928

Source Contig U35_17904

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24245_PI390587928	Hv_44K_v2	TCTAAGAGAGTGTAGCATAGCAACTAGCATTGCAATGCTACACTAGCAGGTACACAGGCA	1081	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362613	3356	2e-24	3189 - 3248	100	60 / 60	plus	ABC07972 ABC08350 ABC19912
MLOC	MLOC_40232.1	908	2e-24	651 - 710	100	60 / 60	plus	ABC07972 ABC19912
JLOC1	JLOC1_26287.1	887	8e-25	652 - 711	100	60 / 60	plus
Harvest21	ABC07972	904	3e-25	821 - 880	100	60 / 60	plus	ABC07972
Harvest35	U35_17904	1165	3e-25	1082 - 1141	100	60 / 60	plus

Contig Sequence (1165 bp)

>U35_17904 1165 Hv_44K_v2
CAAAGTTTGCTTCAGCAGGAGGCATCGAGCATCTTCAAAGGTCCTACAGCAGTGCACAGT
GGCATTCAGCTGGAAGCATCTAGGTCATTCCGTGCGGCTCAGCTTGGTCAATTCCAGCAT
CCCATGTCGTTCCAGCAAGGTATGCCCCAGCACCAGCATACCAATTTCCAAGGCCTGGGC
GCTAGTCCACAATTCCAGCAGCATGTGATCAACCAGCTGCTGCAAGAAGCCAAGAATACC
AATAGCCGTGCTCTTGCTCATCAGCAACAGCAGCAGCAACAGCAGCAGCAACAGCAGCAG
CAGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAACACCAGCAGCAGCAG
CAGCAGCAACAACACCGTCAGCAGCAGCAGCAACATCAGCAGCAACATCAACAGCAGCAG
CAGTCTCCTAGCACTCCCAATGCAAATGGTGGTCTTGCATCTGGAGCCGCGGTCGCCAAC
ACCGCTGCTAGTGGAGAGCAGGCACAGCACATGAATAACGGCGCAGCAAAGGGCGCTGCT
CCGATGGGTATGGCGGGGCCTAGTAATCTGATCAACAGCGGAGCTGCCATGGTCCAGCGA
AGCAGCAGTTTCAAGTCAGTGAGCAGCAACCCGGCCGCTTCTGGCGGCAATGTGGCGACC
CCAAAGGCGGAGTCTGTGCATGACATGGGCGACCTGGAACATCTCATCTCCCACGAACTC
ATGGAGAGCGGGCTGTTCATGGGGGAGCAGCCGGGGGATGGTGGCTTCTCGTGGAACATC
TGACATCATTGTCAAAAAGTCTCGCTACTCTGAGAGCTGTGTTTGATGGTGATATCGCGG
TAGATTATTAGAAGTTTTTTTTTTCTTTTTTTGAGATCGTGTTCGCCGCCTGGAACAGTC
TCTGGTGATCGTAGATTGATGAACCGTCAGTTATGTGCGAGTGAGTTGGTTTGGATAGCA
GTGCAACCCAGTGTTATTAACTAGTATGGGATGACATGCTGTGGTTGTCATTGTGCTGCT
GTCTTCTTACCAGTGTTTGGTCTGCCATCTTTTCTTACTACCCATGGAGTAGTAGATTAT
ATCTAAGAGAGTGTAGCATAGCAACTAGCATTGCAATGCTACACTAGCAGGTACACAGGC
AGTGGCAATCAAGGAAAACCCTGAT

Homology of Contig U35_17904 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None