barSeed - Barley Seed Development Database

Probe CUST_24237_PI390587928

Source Contig U35_20750

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24237_PI390587928	Hv_44K_v2	GATGTGAGCACTCTAATTATCCTGTTCTGTAATGAATCTATGGTACGCTTTGGTAAAAAA	1439	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.026	2.167	1.087	0.874	0.371	0.368
Raw	682.098	1165.647	512.043	676.966	93.375	104.685

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36305.1	1968	9e-22	1765 - 1819	100	55 / 55	plus	ABC14851
JLOC1	JLOC1_23359.2	1893	5e-22	1690 - 1744	100	55 / 55	plus
JLOC1	JLOC1_23359.1	1881	5e-22	1678 - 1732	100	55 / 55	plus
Harvest21	ABC14851	1510	3e-25	1440 - 1499	100	60 / 60	plus	ABC14851
Harvest35	U35_20750	1510	3e-25	1440 - 1499	100	60 / 60	plus
Harvest35	U35_36122	343	8e-21	292 - 343	100	52 / 52	plus

Contig Sequence (1510 bp)

>U35_20750 1510 Hv_44K_v2
GGGATCATCCTGGGCGCCGTCCCGCGCGTGTCGGAGCTGGACGACGCGGACCTCTCCCTC
GCACTCGCCGCGCCGCCGCGCATCTCCGTGCTCACCGTGCCACCGCGCGTGTCCCCCATC
CAGGCCGACCCCACCAGCCGCGCCTGCCCCTGGGTACTCACCGCGGACCCTGCGTCCGGC
CTCCTCCTCCTCAGCGCCCCGCCGCCCCCTCCCACCCCCACTCCACCTCGCCCGGCAACA
TTCTGCAACGGCGTGCGCCTCGCCGAGGTCGGCTACATCAAGCGCCAGCCGCCGACCTAC
TTCGTCTGCGACGTCACCTCCGCCACCGCCTTCCGCCTCCCTCAACCCGGCCGCGACCCG
AGCGGGCTACCTGAGGAGATCAACGCGCTGAACCTCGGCGTCGTCGCTGCACCCGGAGCC
GGAGGCGGCGCGGGGCGCTACATGGTCGTCGAGTTCCGCTACATGTTCGCAGACCAGCAC
GCCACGCTCCTCTGCTTCTCGTCCGACACCGGCGAGTGGGAGTGGAAGCCGGTGCACAAC
CCGCTGGGACGCTGGATTTGGGGCAGAGACGGCGTCGTCGCCCACGACGGCAAGCTCTGG
TGGGTGGATCTCGCCGGGGGCCTCATCTTCTGCGACCCTTTCGCGGACGCGCCGGTGCTG
GACATCGTCCCGCTCCCGGAAAGCGACTGCCATGTGTCTGATGCCTCGTGCGCCCACTGC
GCCGGGAGATCGATGGCCTACCGCCGATTCGTGCAGGTGAGCGCTGGCAAGTTCCGGTGG
GTGGAGTGGAGCTCTCACCGTGACGACGAGGCTCCCATGACGGTCACCATGTGGACGCTG
AATGATCCGGAGGCCAAGGAGTGGGTGCTGGAGTACAAGAAGGTGAGCTTTCAGGAGATC
TGGGCCGACGACAGCTACAAGGCTGCCGGCCTGACGGAGAAGAACCCCACGTTCGCACTC
GTCCACCCCATGAATCCGGACGTGCTCTACTTCTTCCTGGAGGAGCAACTCTTCGGCGTG
GACCTGCGCGCCAAGAGGGTTGTGGAGTGCAGCGTGTACGAGATGGTGGTGCCACCGTCA
GGGAAGCCCCCCAACTGTTTCTCCGTCCACGCATTGGAGCTGCCGATCGCGCTTTCGGCA
GGCTCGCTTCCATCTGATGTTGGCAGCGGTTCCAACAGAAAAGAGTCTACCCCATTGGCA
TCATCTGTTTCCCAGGAGAAAGCGCTGAGTCTGCAGATCGAGTTTGAGGAGGGTGAGGAG
GGATATTGAGGCAGCATATACCTCATCTGATCAACAAGGCAATGGATCTCCATGAAGAGA
TAACTTATATCTTATTAGTCTCTAGTCCCTCAAGATGATCTTGTCCTTTCGATTGCGGCC
TCTTTGGTTCTATCTACGTACCCTTGCTAATTTCTTAGTTGTAACTTTCAACAGGATGTG
ATGTGAGCACTCTAATTATCCTGTTCTGTAATGAATCTATGGTACGCTTTGGTAAAAAAA
AAAAAAAAAA

Homology of Contig U35_20750 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g13870.1	428	5e-75	protein\|expressed protein
Brachypodium v1_2	Bradi2g10470.1	798	4e-71
Arabidopsis v10	None